Evidence map›Paper›PMID 29391557›Full record

ArticleScientific reports2018

SMARCA2-regulated host cell factors are required for MxA restriction of influenza A viruses.

Dominik Dornfeld, Alexandra H Dudek, Thibaut Vausselin, Sira C Günther, Judd F Hultquist, Sebastian Giese, Daria Khokhlova-Cubberley, Yap C Chew, Lars Pache, Nevan J Krogan and 3 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.3field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 24 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 2 countries.

Dominik DornfeldInstitute of Virology, Medical Center, University of Freiburg, 79104, Freiburg, Germany.
Alexandra H DudekInstitute of Virology, Medical Center, University of Freiburg, 79104, Freiburg, Germany.
Thibaut VausselinDepartment of Microbiology, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA.
Sira C GüntherInstitute of Virology, Medical Center, University of Freiburg, 79104, Freiburg, Germany.
Judd F HultquistQuantitative Biosciences Institute, QBI, Department of Cellular and Molecular Pharmacology, University of California, San Francisco, San Francisco, CA, 94158, USA.
Sebastian GieseInstitute of Virology, Medical Center, University of Freiburg, 79104, Freiburg, Germany.
Daria Khokhlova-CubberleyZymo Research Corp, Irvine, CA, 92614, USA.
Yap C ChewZymo Research Corp, Irvine, CA, 92614, USA.
Lars PacheSanford Burnham Prebys Medical Discovery Institute, Infectious and Inflammatory Disease Center, 10901 North Torrey Pines Road, La Jolla, CA, 92037, USA.
Nevan J KroganQuantitative Biosciences Institute, QBI, Department of Cellular and Molecular Pharmacology, University of California, San Francisco, San Francisco, CA, 94158, USA.
Adolfo Garcia-SastreDepartment of Microbiology, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA. adolfo.garcia-sastre@mssm.edu.
Martin SchwemmleInstitute of Virology, Medical Center, University of Freiburg, 79104, Freiburg, Germany. martin.schwemmle@uniklinik-freiburg.de.
Megan L ShawDepartment of Microbiology, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA. megan.shaw@mssm.edu.ORCID http://orcid.org/0000-0002-1267-0891
University of Freiburg · DEIcahn School of Medicine at Mount Sinai · USGladstone Institutes · USSanford Burnham Prebys Medical Discovery Institute · US

Funding

Virus CoreU19AI106754 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI KROGAN, NEVAN J · 2013 to 2017
$26.0M
Microbial Pathogenesis and Host DefenseT32AI060537 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Joanne N. Engel · 2004 to 2026
$6.5M
Host-targeted antivirals for influenza and other respiratory virus infectionsR21AI102169 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI SHAW, MEGAN LOUISE · 2012 to 2013
$463k
NIAID NIH HHS R21 AI102169NIAID NIH HHS T32 AI060537NIAID NIH HHS U19 AI106754
6 · The paper itself

Abstract

The human interferon (IFN)-induced MxA protein is a key antiviral host restriction factor exhibiting broad antiviral activity against many RNA viruses, including highly pathogenic avian influenza A viruses (IAV) of the H5N1 and H7N7 subtype. To date the mechanism for how MxA exerts its antiviral activity is unclear, however, additional cellular factors are believed to be essential for this activity. To identify MxA cofactors we performed a genome-wide siRNA-based screen in human airway epithelial cells (A549) constitutively expressing MxA using an H5N1 reporter virus. These data were complemented with a proteomic screen to identify MxA-interacting proteins. The combined data identified SMARCA2, the ATPase subunit of the BAF chromatin remodeling complex, as a crucial factor required for the antiviral activity of MxA against IAV. Intriguingly, our data demonstrate that although SMARCA2 is essential for expression of some IFN-stimulated genes (ISGs), and the establishment of an antiviral state, it is not required for expression of MxA, suggesting an indirect effect on MxA activity. Transcriptome analysis of SMARCA2-depleted A549-MxA cells identified a small set of SMARCA2-regulated factors required for activity of MxA, in particular IFITM2 and IGFBP3. These findings reveal that several virus-inducible factors work in concert to enable MxA restriction of IAV.

Indexed as

A549 CellsAntiviral AgentsGene Expression ProfilingHost-Pathogen InteractionsHumansInfluenza A Virus, H5N1 SubtypeInfluenza A Virus, H7N7 SubtypeInfluenza, HumanInterferonsMyxovirus Resistance ProteinsProteomeTranscription FactorsVirus ReplicationAntiviral AgentsInterferonsMyxovirus Resistance ProteinsProteomeSMARCA2 protein, humanTranscription Factors

Identifiers

PMID29391557
PMCPMC5794779
OpenAlexW2805673495

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.