Evidence map›Paper›PMID 29391460›Full record

ArticleScientific reports2018

Genetic interaction involving photoperiod-responsive Hd1 promotes early flowering under long-day conditions in rice.

Prasanta K Subudhi, Teresa B De Leon, Ronald Tapia, Chenglin Chai, Ratna Karan, John Ontoy, Pradeep K Singh

Abstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Review
  3. Molecular Research in Rice.International journal of molecular sciences · 2023
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Prasanta K SubudhiSchool of Plant, Environmental, and Soil Sciences, Louisiana State University Agricultural Center, Baton Rouge, LA, 70803, USA. psubudhi@agcenter.lsu.edu.
Teresa B De LeonUniversity of California, Davis, CA, USA.
Ronald TapiaDepartment of Horticultural Science, University of Florida, IFAS Gulf Coast Research and Education Center, 14625 CR 672, Wimauma, FL, 33598, USA.
Chenglin ChaiNoble Research Institute, 2510 Sam Noble Parkway, Ardmore, OK, 73401, USA.
Ratna KaranUniversity of Florida, Gainesville, FL, 32611, USA.
John OntoySchool of Plant, Environmental, and Soil Sciences, Louisiana State University Agricultural Center, Baton Rouge, LA, 70803, USA.
Pradeep K SinghDivision of Genetics, Indian Agricultural Research Institute, New Delhi, 110012, India.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Although flowering in rice has been extensively investigated, few studies focused on genetic interactions. Flowering evaluation of two recombinant inbred line (RIL) populations involving photo-insensitive rice cultivars, Bengal and Cypress, and a weedy rice accession, PSRR-1, under natural long-day (LD) conditions, revealed six to ten quantitative trait loci (QTLs) and a major QTL interaction. In addition to the validation of several previously cloned genes using an introgression lines (IL) population of PSRR-1, a few novel QTLs were also discovered. Analysis of the marker profiles of the advanced backcross lines revealed that Hd1 allele of PSRR-1 was responsible for the photoperiodic response in the near-isogenic lines (NILs) developed in both cultivar backgrounds. Based on the phenotypic and genotypic data of the NILs, and NIL mapping population and the transcript abundance of key flowering pathway genes, we conclude that Hd1 and its interaction with a novel gene other than Ghd7 play an important role in controlling flowering under LD conditions. Our study demonstrates the important role of genetic interaction that regulates flowering time in rice and the need for further investigation to exploit it for breeding adaptable rice varieties.

Indexed as

Gene Expression Regulation, PlantPhotoperiodFlowersGene Expression Regulation, DevelopmentalOryzaPlant ProteinsQuantitative Trait LociTranscription FactorsPlant ProteinsTranscription Factors

Identifiers

PMID29391460
PMCPMC5794782

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.