Evidence map›Paper›PMID 29389935›Full record

ArticlePLoS genetics2018

Novel pedigree analysis implicates DNA repair and chromatin remodeling in multiple myeloma risk.

Rosalie G Waller, Todd M Darlington, Xiaomu Wei, Michael J Madsen, Alun Thomas, Karen Curtin, Hilary Coon, Venkatesh Rajamanickam, Justin Musinsky, David Jayabalan and 16 more

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 44 citations in OpenAlex.

  1. Article
  2. Multiple myeloma risk linked to DNA damage response genes.Journal of hematology & oncology · 2026
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  20. Family Study Designs Informed by Tumor Heterogeneity and Multi-Cancer Pleiotropies: The Power of the Utah Population Database.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors at 7 institutions in 2 countries.

Rosalie G WallerUniversity of Utah School of Medicine, Salt Lake City, Utah, United States of America.ORCID 0000-0001-9437-8861
Todd M DarlingtonUniversity of Utah School of Medicine, Salt Lake City, Utah, United States of America.ORCID 0000-0001-6455-7906
Xiaomu WeiWeill Cornell Medical College, New York, New York, United States of America.ORCID 0000-0001-8331-6112
Michael J MadsenUniversity of Utah School of Medicine, Salt Lake City, Utah, United States of America.ORCID 0000-0002-7200-6706
Alun ThomasUniversity of Utah School of Medicine, Salt Lake City, Utah, United States of America.ORCID 0000-0001-5650-7044
Karen CurtinUniversity of Utah School of Medicine, Salt Lake City, Utah, United States of America.
Hilary CoonUniversity of Utah School of Medicine, Salt Lake City, Utah, United States of America.ORCID 0000-0002-8877-5446
Venkatesh RajamanickamUniversity of Utah School of Medicine, Salt Lake City, Utah, United States of America.
Justin MusinskyMemorial Sloan Kettering Cancer Center, New York, New York, United States of America.ORCID 0000-0002-2180-2032
David JayabalanWeill Cornell Medical College, New York, New York, United States of America.
Djordje AtanackovicUniversity of Utah School of Medicine, Salt Lake City, Utah, United States of America.
S Vincent RajkumarMayo Clinic, Rochester, Minnesota, United States of America.
Shaji KumarMayo Clinic, Rochester, Minnesota, United States of America.
Susan SlagerMayo Clinic, Rochester, Minnesota, United States of America.
Mridu MiddhaIcahn School of Medicine at Mount Sinai, New York, New York, United States of America.ORCID 0000-0002-2857-7149
Perrine GaliaProfileXpert, Lyon, France.
Delphine DemangelProfileXpert, Lyon, France.
Mohamed SalamaUniversity of Utah School of Medicine, Salt Lake City, Utah, United States of America.
Vijai JosephMemorial Sloan Kettering Cancer Center, New York, New York, United States of America.
James McKayInternational Agency for Research on Cancer, Lyon, France.ORCID 0000-0002-1787-3874
Kenneth OffitMemorial Sloan Kettering Cancer Center, New York, New York, United States of America.ORCID 0000-0002-7454-329X
Robert J KleinIcahn School of Medicine at Mount Sinai, New York, New York, United States of America.ORCID 0000-0003-3539-5391
Steven M LipkinWeill Cornell Medical College, New York, New York, United States of America.
Charles DumontetINSERM 1052/CNRS 5286/UCBL, Lyon, France.
Celine M VachonMayo Clinic, Rochester, Minnesota, United States of America.
Nicola J CampUniversity of Utah School of Medicine, Salt Lake City, Utah, United States of America.ORCID 0000-0002-4788-1998
University of Utah · USMayo Clinic · USCornell University · USMemorial Sloan Kettering Cancer Center · USIcahn School of Medicine at Mount Sinai · USCentre international de recherche sur le cancer · FRUniversité Claude Bernard Lyon 1 · FR

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
UTAH REGIONAL CANCER CENTERP30CA042014 · NCI · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI Jared P Rutter · 1986 to 2026
$72.6M
Project 4: Targeting Resistance to T-Cell Directed Therapy in Multiple MyelomaP50CA186781 · NCI · MAYO CLINIC ARIZONA · PI Rafael Fonseca · 2015 to 2026
$25.5M
UNIVERSITY OF UTAH MEDICAL INFORMATICS TRAININGT15LM007124 · NLM · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI Karen Louise Eilbeck · 1997 to 2026
$22.0M
University of Utah Center for Clinical and Translational ScienceUL1TR001067 · NCATS · UNIVERSITY OF UTAH · PI DERE, WILLARD H., HESS, RACHEL · 2013 to 2017
$19.8M
Prevalence and Progression of Monoclonal GammopathiesR01CA107476 · NCI · MAYO CLINIC ROCHESTER · PI KUMAR, SHAJI KUNNATHU, RAJKUMAR, S VINCENT · 2004 to 2018
$4.6M
Genetic analysis of high-risk Utah suicide pedigreesR01MH099134 · NIMH · UNIVERSITY OF UTAH · PI COON, HILARY · 2013 to 2017
$3.9M
GENETIC EPIDEMIOLOGY OF CHRONIC LYMPHOCYTIC LEUKEMIAR01CA134674 · NCI · UNIVERSITY OF UTAH · PI CAMP, NICOLA J. · 2010 to 2016
$3.8M
Onset and biomarkers for progression of monoclonal gammopathiesR01CA168762 · NCI · MAYO CLINIC ROCHESTER · PI KUMAR, SHAJI KUNNATHU, RAJKUMAR, S VINCENT · 2012 to 2024
$3.2M
Shared Genomic Segment Analysis and Tumor Subtyping in High-Risk BrCa PedigreesR01CA163353 · NCI · UNIVERSITY OF UTAH · PI CAMP, NICOLA J. · 2012 to 2016
$2.9M
Rare Variant Associations With Severe Obesity in Utah PedigreesR01DK093151 · NIDDK · UNIVERSITY OF UTAH · PI HASSTEDT, SANDRA J · 2011 to 2014
$2.0M
Transforming Genomics with 5 PB Big Omics Data Engine Cray CS300-AC SupercomputerS10OD018522 · OD · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI KOVATCH, PATRICIA · 2014 to 2014
$1.9M
NCATS NIH HHS UL1 TR001067NCI NIH HHS P30 CA008748NCI NIH HHS P30 CA042014NCI NIH HHS P50 CA186781NCI NIH HHS R01 CA107476NCI NIH HHS R01 CA134674NCI NIH HHS R01 CA163353NCI NIH HHS R01 CA167824NCI NIH HHS R01 CA168762NCI NIH HHS R21 CA152336NCI NIH HHS R21 CA191896NIDDK NIH HHS R01 DK091374NIDDK NIH HHS R01 DK093151NIH HHS P30-CA-42014NIH HHS R01-CA-107476NIH HHS R01-CA-167824NIH HHS R01-CA-168762NIH HHS R01-DK-091374NIH HHS R01-DK-093151NIH HHS R01-MH-094400NIH HHS R01-MH-099134NIH HHS R21-CA-191896NIH HHS S10 OD018522NIH HHS S10-OD-018522NIH HHS T15-LM-007124NIH HHS UL1TR001067NIMH NIH HHS R01 MH094400NIMH NIH HHS R01 MH099134NLM NIH HHS T15 LM007124World Health Organization 001
6 · The paper itself

Abstract

The high-risk pedigree (HRP) design is an established strategy to discover rare, highly-penetrant, Mendelian-like causal variants. Its success, however, in complex traits has been modest, largely due to challenges of genetic heterogeneity and complex inheritance models. We describe a HRP strategy that addresses intra-familial heterogeneity, and identifies inherited segments important for mapping regulatory risk. We apply this new Shared Genomic Segment (SGS) method in 11 extended, Utah, multiple myeloma (MM) HRPs, and subsequent exome sequencing in SGS regions of interest in 1063 MM / MGUS (monoclonal gammopathy of undetermined significance-a precursor to MM) cases and 964 controls from a jointly-called collaborative resource, including cases from the initial 11 HRPs. One genome-wide significant 1.8 Mb shared segment was found at 6q16. Exome sequencing in this region revealed predicted deleterious variants in USP45 (p.Gln691* and p.Gln621Glu), a gene known to influence DNA repair through endonuclease regulation. Additionally, a 1.2 Mb segment at 1p36.11 is inherited in two Utah HRPs, with coding variants identified in ARID1A (p.Ser90Gly and p.Met890Val), a key gene in the SWI/SNF chromatin remodeling complex. Our results provide compelling statistical and genetic evidence for segregating risk variants for MM. In addition, we demonstrate a novel strategy to use large HRPs for risk-variant discovery more generally in complex traits.

Indexed as

PedigreeCase-Control StudiesChromatin Assembly and DisassemblyDatabases, GeneticDNA Mutational AnalysisDNA RepairFamilyFemaleGenetic Predisposition to DiseaseGenetic VariationGenome-Wide Association StudyHumansMaleMultiple Myeloma

Identifiers

PMID29389935
PMCPMC5794067
OpenAlexW2949752861

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.