Evidence map›Paper›PMID 29388792›Full record

ArticleAmerican journal of physiology. Gastrointestinal and liver physiology2018

Transcription factor GATA6: a novel marker and putative inducer of ductal metaplasia in biliary atresia.

Tea Soini, Marjut Pihlajoki, Noora Andersson, Jouko Lohi, Kari A Huppert, David A Rudnick, Stacey S Huppert, David B Wilson, Mikko P Pakarinen, Markku Heikinheimo

Open access · bronzeAbstract read
In one paragraph

Article in American journal of physiology. Gastrointestinal and liver physiology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed, 1 pooled it
3.1field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 1 synthesis or guideline pooled it, 17 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Biliary Atresia Animal Models: Is the Needle in a Haystack?International journal of molecular sciences · 2022
    Review
  5. Role of Immune Cells in Biliary Repair.Frontiers in immunology · 2022
    Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Tea SoiniPediatric Research Center, Children's Hospital, University of Helsinki and Helsinki University Hospital , Helsinki , Finland.
Marjut PihlajokiPediatric Research Center, Children's Hospital, University of Helsinki and Helsinki University Hospital , Helsinki , Finland.
Noora AnderssonPediatric Research Center, Children's Hospital, University of Helsinki and Helsinki University Hospital , Helsinki , Finland.
Jouko LohiPathology, University of Helsinki and Helsinki University Hospital , Helsinki , Finland.
Kari A HuppertDivision of Gastroenterology, Hepatology and Nutrition, Cincinnati Children's Hospital Research Foundation and the University of Cincinnati College of Medicine , Cincinnati, Ohio.
David A RudnickDepartment of Pediatrics, Saint Louis Children's Hospital, Washington University School of Medicine , Saint Louis, Missouri.
Stacey S HuppertDivision of Gastroenterology, Hepatology and Nutrition, Cincinnati Children's Hospital Research Foundation and the University of Cincinnati College of Medicine , Cincinnati, Ohio.
David B WilsonDepartment of Pediatrics, Saint Louis Children's Hospital, Washington University School of Medicine , Saint Louis, Missouri.
Mikko P PakarinenPediatric Research Center, Children's Hospital, University of Helsinki and Helsinki University Hospital , Helsinki , Finland.
Markku HeikinheimoPediatric Research Center, Children's Hospital, University of Helsinki and Helsinki University Hospital , Helsinki , Finland.
Helsinki University Hospital · FISt. Louis Children's Hospital · USCincinnati Children's Hospital Medical Center · US

Funding

Stem Cell/Organoid and Genome Editing CoreP30DK078392 · NIDDK · CINCINNATI CHILDRENS HOSP MED CTR · PI Alexander Miethke · 2007 to 2026
$24.4M
Building a functional biliary system from hepatocytesR01DK107553 · NIDDK · CINCINNATI CHILDRENS HOSP MED CTR · PI HUPPERT, STACEY S, WILLENBRING, HOLGER · 2016 to 2020
$2.4M
Molecular requirements for proliferation of fetal and adult liver progenitorsR01DK078640 · NIDDK · VANDERBILT UNIVERSITY · PI HUPPERT, STACEY S · 2008 to 2012
$1.5M
NIDDK NIH HHS P30 DK078392NIDDK NIH HHS R01 DK078640NIDDK NIH HHS R01 DK107553
6 · The paper itself

Abstract

Biliary atresia (BA), a neonatal liver disease, is characterized by obstruction of extrahepatic bile ducts with subsequent cholestasis, inflammation, and progressive liver fibrosis. To gain insights into the pathophysiology of BA, we focused attention on GATA6, a transcription factor implicated in biliary development. Early in fetal development GATA6 expression is evident in cholangiocytes and hepatocytes, but by late gestation it is extinguished in hepatocytes. Utilizing a unique set of BA liver samples collected before and after successful portoenterostomy (PE), we found that GATA6 expression is markedly upregulated in hepatocytes of patients with BA compared with healthy and cholestatic disease controls. This upregulation is recapitulated in two murine models simulating bile duct obstruction and intrahepatic bile ductule expansion. GATA6 expression in BA livers correlates with two established negative prognostic indicators (age at PE, degree of intrahepatic bile ductule expansion) and decreases after normalization of serum bilirubin by PE. GATA6 expression in BA livers correlates with expression of known regulators of cholangiocyte differentiation ( JAGGED1, HNF1β, and HNF6). These same genes are upregulated after enforced expression of GATA6 in human hepatocyte cell models. In conclusion, GATA6 is a novel marker and a putative driver of hepatocyte-cholangiocyte metaplasia in BA, and its expression in hepatocytes is downregulated after successful PE. NEW & NOTEWORTHY A pathological hallmark in the liver of patients with biliary atresia is ductular reaction, an expansion of new bile ductules that are thought to arise from conversion of mature hepatocytes. Here, we show that transcription factor GATA6 is a marker and potential driver of hepatocyte ductal metaplasia in biliary atresia. Hepatocyte GATA6 expression is elevated in biliary atresia, correlates with bile duct expansion, and decreases after successful portoenterostomy.

Indexed as

Biliary AtresiaAnimalsBile Ducts, ExtrahepaticBiomarkersCell TransdifferentiationCholestasisDisease Models, AnimalGATA6 Transcription FactorHepatocytesHep G2 CellsHumansLiverMetaplasiaMicePortoenterostomy, HepaticBiomarkersGATA6 protein, humanGata6 protein, mouseGATA6 Transcription Factorcholestasisductular reactionhepatocyte transdifferentiationtranscriptional regulation

Identifiers

PMID29388792
PMCPMC6008062
OpenAlexW2791494194

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.