Evidence map›Paper›PMID 29387899›Full record

ArticlePlant cell reports2018

QTL-Seq-based genetic analysis identifies a major genomic region governing dwarfness in rice (Oryza sativa L.).

Gopalakrishnamurty Kadambari, Lakshminarayana R Vemireddy, Akkareddy Srividhya, Ranjithkumar Nagireddy, Siddhartha Swarup Jena, Mahendranath Gandikota, Santosh Patil, Roja Veeraghattapu, D A K Deborah, G Eswar Reddy and 7 more

Abstract read
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In one paragraph

Article in Plant cell reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 32 citations in OpenAlex.

  1. Advances in mutant characterization for detecting causal mutations in crop plants.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026
    Review
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  14. Characterization and Rapid Gene-Mapping of Leaf Lesion Mimic Phenotype ofInternational journal of molecular sciences · 2019
    Article
  15. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 2 institutions in 1 country.

Gopalakrishnamurty KadambariInstitute of Biotechnology, Acharya NG Ranga Agricultural University, Rajendranagar, Hyderabad, Andhra Pradesh, 500030, India.
Lakshminarayana R VemireddyInstitute of Biotechnology, Acharya NG Ranga Agricultural University, Rajendranagar, Hyderabad, Andhra Pradesh, 500030, India. drvlnreddy@gmail.com.
Akkareddy SrividhyaInstitute of Biotechnology, Acharya NG Ranga Agricultural University, Rajendranagar, Hyderabad, Andhra Pradesh, 500030, India.
Ranjithkumar NagireddyInstitute of Biotechnology, Acharya NG Ranga Agricultural University, Rajendranagar, Hyderabad, Andhra Pradesh, 500030, India.
Siddhartha Swarup JenaInstitute of Biotechnology, Acharya NG Ranga Agricultural University, Rajendranagar, Hyderabad, Andhra Pradesh, 500030, India.
Mahendranath GandikotaInstitute of Biotechnology, Acharya NG Ranga Agricultural University, Rajendranagar, Hyderabad, Andhra Pradesh, 500030, India.
Santosh PatilInstitute of Biotechnology, Acharya NG Ranga Agricultural University, Rajendranagar, Hyderabad, Andhra Pradesh, 500030, India.
Roja VeeraghattapuInstitute of Biotechnology, Acharya NG Ranga Agricultural University, Rajendranagar, Hyderabad, Andhra Pradesh, 500030, India.
D A K DeborahInstitute of Biotechnology, Acharya NG Ranga Agricultural University, Rajendranagar, Hyderabad, Andhra Pradesh, 500030, India.
G Eswar ReddyInstitute of Biotechnology, Acharya NG Ranga Agricultural University, Rajendranagar, Hyderabad, Andhra Pradesh, 500030, India.
Maliha ShakeInstitute of Biotechnology, Acharya NG Ranga Agricultural University, Rajendranagar, Hyderabad, Andhra Pradesh, 500030, India.
Aleena DasariInstitute of Biotechnology, Acharya NG Ranga Agricultural University, Rajendranagar, Hyderabad, Andhra Pradesh, 500030, India.
P V RamanaraoInstitute of Biotechnology, Acharya NG Ranga Agricultural University, Rajendranagar, Hyderabad, Andhra Pradesh, 500030, India.
Ch V DurgaraniInstitute of Biotechnology, Acharya NG Ranga Agricultural University, Rajendranagar, Hyderabad, Andhra Pradesh, 500030, India.
C N NeerajaIndian Institute of Rice Research, Rajendranagar, Hyderabad, Andhra Pradesh, 500030, India.
E A SiddiqInstitute of Biotechnology, Acharya NG Ranga Agricultural University, Rajendranagar, Hyderabad, Andhra Pradesh, 500030, India.
Maganti SheshumadhavIndian Institute of Rice Research, Rajendranagar, Hyderabad, Andhra Pradesh, 500030, India.
Acharya N. G. Ranga Agricultural University · INIndian Institute of Rice Research · IN

Funding

Department of science and Technology, India Sanction Order: SR/FT/LS-061/2009; 13.12.2012
6 · The paper itself

Abstract

key messageA major dwarfing region for plant height, asd1, was identified employing the next-generation sequencing-based QTL-Seq approach from a dwarf mutant and is demonstrated to be responsible for the dwarf nature with least penalty on yield in rice. The yield plateauing of modern rice is witnessed since many decades due to the narrow genetic base owing to the usage of a single recessive gene, i.e., semi-dwarf-1 (sd-1) for development of short-statured varieties throughout the world. This calls for the searching of alternate sources for short stature in rice. To this end, we made an attempt to uncover yet another, but valuable dwarfing gene employing next-generation sequencing (NGS)-based QTL-Seq approach. Here, we have identified a major QTL governing plant height on chromosome 1, i.e., alternate semi-dwarf 1 (asd1) from an F

Indexed as

Amino Acid SequenceChromosome MappingChromosomes, PlantGenes, PlantGenome, PlantHigh-Throughput Nucleotide SequencingMutationOryzaPhenotypePlant BreedingQuantitative Trait LociSequence Homology, Amino AcidDwarf genePlant height and semi-dwarf (sd1) geneQTL-SeqRice

Identifiers

PMID29387899
OpenAlexW2789257625

What OpenQuestion holds

Textmetadata
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.