Evidence map›Paper›PMID 29386578›Full record

ArticleScientific reports2018

A model species for agricultural pest genomics: the genome of the Colorado potato beetle, Leptinotarsa decemlineata (Coleoptera: Chrysomelidae).

Sean D Schoville, Yolanda H Chen, Martin N Andersson, Joshua B Benoit, Anita Bhandari, Julia H Bowsher, Kristian Brevik, Kaat Cappelle, Mei-Ju M Chen, Anna K Childers and 49 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 118 papers.

0numbers the graph read from it
0cells of the map it votes in
118citing papers in PubMed
17.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

118 citing papers in PubMed, 286 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. SilencingInsects · 2025
    Article
  13. Article
  14. Article
  15. Article
  16. Genome Annotation.Methods in molecular biology (Clifton, N.J.) · 2025
    Article
  17. Article
  18. Article
  19. Article
  20. Article

58 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

59 authors at 20 institutions in 15 countries.

Sean D SchovilleDepartment of Entomology, University of Wisconsin-Madison, Madison, USA. sean.schoville@wisc.edu.ORCID http://orcid.org/0000-0001-7364-434X
Yolanda H ChenDepartment of Plant and Soil Sciences, University of Vermont, Burlington, USA.
Martin N AnderssonDepartment of Biology, Lund University, Lund, Sweden.
Joshua B BenoitDepartment of Biological Sciences, University of Cincinnati, Cincinnati, USA.
Anita BhandariDepartment of Molecular Physiology, Christian-Albrechts-University at Kiel, Kiel, Germany.
Julia H BowsherDepartment of Biological Sciences, North Dakota State University, Fargo, USA.
Kristian BrevikDepartment of Plant and Soil Sciences, University of Vermont, Burlington, USA.
Kaat CappelleDepartment of Crop Protection, Ghent University, Ghent, Belgium.
Mei-Ju M ChenUSDA-ARS National Agricultural Library, Beltsville, MD, USA.
Anna K ChildersUSDA-ARS Bee Research Lab, Beltsville, MD, USA.ORCID http://orcid.org/0000-0002-0747-8539
Christopher ChildersUSDA-ARS National Agricultural Library, Beltsville, MD, USA.ORCID http://orcid.org/0000-0002-1253-5550
Olivier ChristiaensDepartment of Crop Protection, Ghent University, Ghent, Belgium.
Justin ClementsDepartment of Entomology, University of Wisconsin-Madison, Madison, USA.
Elise M DidionDepartment of Biological Sciences, University of Cincinnati, Cincinnati, USA.
Elena N ElpidinaA.N. Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Moskva, Russia.
Patamarerk EngsontiaDepartment of Biology, Faculty of Science, Prince of Songkla University, Amphoe Hat Yai, Thailand.
Markus FriedrichDepartment of Biological Sciences, Wayne State University, Detroit, USA.
Inmaculada García-RoblesDepartment of Genetics, University of Valencia, Valencia, Spain.ORCID http://orcid.org/0000-0002-0165-399X
Richard A GibbsDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, USA.
Chandan GoswamiNational Institute of Science Education and Research, Bhubaneswar, India.
Alessandro GrapputoDepartment of Biology, University of Padova, Padova, Italy.ORCID http://orcid.org/0000-0001-9255-4294
Kristina GrudenDepartment of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.
Marcin GrynbergInstitute of Biochemistry and Biophysics, Polish Academy of Sciences, Warsaw, Poland.
Bernard HenrissatArchitecture et Fonction des Macromolécules Biologiques, CNRS, Aix-Marseille Université, 13288, Marseille, France.
Emily C JenningsDepartment of Biological Sciences, University of Cincinnati, Cincinnati, USA.ORCID http://orcid.org/0000-0002-7687-5319
Jeffery W JonesDepartment of Biological Sciences, Wayne State University, Detroit, USA.
Megha KalsiDepartment of Entomology, University of Kentucky, Lexington, USA.
Sher A KhanDepartment of Entomology, Texas A&M University, College Station, USA.
Abhishek KumarDepartment of Genetics & Molecular Biology in Botany, Christian-Albrechts-University at Kiel, Kiel, Germany.ORCID http://orcid.org/0000-0003-4172-4059
Fei LiDepartment of Entomology, Nanjing Agricultural University, Nanjing, China.
Vincent LombardArchitecture et Fonction des Macromolécules Biologiques, CNRS, Aix-Marseille Université, 13288, Marseille, France.
Xingzhou MaDepartment of Entomology, Nanjing Agricultural University, Nanjing, China.
Alexander MartynovCenter for Data-Intensive Biomedicine and Biotechnology, Skolkovo Institute of Science and Technology, Moscow, Russia.ORCID http://orcid.org/0000-0002-4578-844X
Nicholas J MillerDepartment of Biology, Illinois Institute of Technology, Chicago, USA.
Robert F MitchellDepartment of Biology, University of Wisconsin-Oshkosh, Oshkosh, USA.
Monica Munoz-TorresEnvironmental Genomics and Systems Biology Division, Lawrence Berkeley National Laboratory, Berkeley, USA.
Anna MuszewskaInstitute of Biochemistry and Biophysics, Polish Academy of Sciences, Warsaw, Poland.
Brenda OppertUSDA-ARS Center for Grain and Animal Health Research, New York, USA.
Subba Reddy PalliDepartment of Entomology, University of Kentucky, Lexington, USA.ORCID http://orcid.org/0000-0002-0873-3247
Kristen A PanfilioInstitute for Developmental Biology, University of Cologne, Köln, Germany.
Yannick PauchetDepartment of Entomology, Max Planck Institute for Chemical Ecology, Jena, Germany.ORCID http://orcid.org/0000-0002-2918-8946
Lindsey C PerkinUSDA-ARS Center for Grain and Animal Health Research, New York, USA.
Marko PetekDepartment of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.
Monica F PoelchauUSDA-ARS National Agricultural Library, Beltsville, MD, USA.
Éric RecordINRA, Aix-Marseille Université, UMR1163, Biodiversité et Biotechnologie Fongiques, Marseille, France.
Joseph P RinehartUSDA-ARS Insect Genetics and Biochemistry Research Unit, Fargo, ND, USA.
Hugh M RobertsonDepartment of Entomology, University of Illinois at Urbana-Champaign, Champaign, IL, USA.
Andrew J RosendaleDepartment of Biological Sciences, University of Cincinnati, Cincinnati, USA.
Victor M Ruiz-ArroyoDepartment of Genetics, University of Valencia, Valencia, Spain.
Guy SmaggheDepartment of Crop Protection, Ghent University, Ghent, Belgium.ORCID http://orcid.org/0000-0001-8334-3313
Zsofia SzendreiDepartment of Entomology, Michigan State University, East Lansing, USA.
Gregg W C ThomasDepartment of Biology and School of Informatics and Computing, Indiana University, Bloomington, USA.
Alex S TorsonDepartment of Biological Sciences, North Dakota State University, Fargo, USA.
Iris M Vargas JentzschInstitute for Developmental Biology, University of Cologne, Köln, Germany.
Matthew T WeirauchCenter for Autoimmune Genomics and Etiology, Division of Biomedical Informatics and Division of Developmental Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, USA.ORCID http://orcid.org/0000-0001-7977-9122
Ashley D YatesDepartment of Entomology, The Ohio State University, Columbus, USA.
George D YocumUSDA-ARS Insect Genetics and Biochemistry Research Unit, Fargo, ND, USA.
June-Sun YoonDepartment of Entomology, University of Kentucky, Lexington, USA.
Stephen RichardsDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, USA.
University of Cincinnati · USEdward T. Schafer Agricultural Research Center · USGhent University · BENational Agricultural Library · USUniversity of Kentucky · USBaylor College of Medicine · USCenter for Grain and Animal Health Research · USCentre National de la Recherche Scientifique · FRInstitute of Biochemistry and Biophysics, Polish Academy of Sciences · PLNanjing Agricultural University · CNNational Institute of Biology · SINorth Dakota State University · USUniversitat de València · ESUniversity of Cologne · DEUniversity of Vermont · USUniversity of Wisconsin–Madison · USWayne State University · USAix-Marseille Université · FRChristian-Albrechts-Universität zu Kiel · DECincinnati Children's Hospital Medical Center · US

Funding

The Human Genome Sequencing CenterU54HG003273 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI GIBBS, RICHARD A · 2004 to 2015
$341.3M
POST DOCTORAL EXCELLENCE IN RESEARCH AND TEACHINGK12GM000708 · NIGMS · UNIVERSITY OF ARIZONA · PI STRAUSFELD, NICHOLAS J · 2000 to 2018
$21.5M
Web-based visualization of coronavirus genomes and proteinsR01HG004483 · NHGRI · UNIVERSITY OF CALIFORNIA BERKELEY · PI Ian H Holmes · 2007 to 2026
$9.3M
Novel Web-based Tools for Collaborative Community-Driven Genome Feature AnnotatioR01GM080203 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI Ian H Holmes · 2007 to 2026
$8.5M
Molecular Analysis of Juvenile Hormone ActionR01GM070559 · NIGMS · UNIVERSITY OF KENTUCKY · PI PALLI, SUBBA R · 2005 to 2024
$4.1M
NHGRI NIH HHS R01 HG004483NHGRI NIH HHS U54 HG003273NIGMS NIH HHS K12 GM000708NIGMS NIH HHS R01 GM080203
6 · The paper itself

Abstract

The Colorado potato beetle is one of the most challenging agricultural pests to manage. It has shown a spectacular ability to adapt to a variety of solanaceaeous plants and variable climates during its global invasion, and, notably, to rapidly evolve insecticide resistance. To examine evidence of rapid evolutionary change, and to understand the genetic basis of herbivory and insecticide resistance, we tested for structural and functional genomic changes relative to other arthropod species using genome sequencing, transcriptomics, and community annotation. Two factors that might facilitate rapid evolutionary change include transposable elements, which comprise at least 17% of the genome and are rapidly evolving compared to other Coleoptera, and high levels of nucleotide diversity in rapidly growing pest populations. Adaptations to plant feeding are evident in gene expansions and differential expression of digestive enzymes in gut tissues, as well as expansions of gustatory receptors for bitter tasting. Surprisingly, the suite of genes involved in insecticide resistance is similar to other beetles. Finally, duplications in the RNAi pathway might explain why Leptinotarsa decemlineata has high sensitivity to dsRNA. The L. decemlineata genome provides opportunities to investigate a broad range of phenotypes and to develop sustainable methods to control this widely successful pest.

Indexed as

AgricultureGenome, InsectGenomicsAnimalsColeopteraDNA Transposable ElementsEvolution, MolecularFemaleGene Expression RegulationGenetics, PopulationGenetic VariationHost-Parasite InteractionsInsecticide ResistanceInsect ProteinsMaleMolecular Sequence AnnotationDNA Transposable ElementsInsect ProteinsTranscription Factors

Identifiers

PMID29386578
PMCPMC5792627
OpenAlexW2760275602

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.