ArticleScientific reports2018
Characterization of soil nematode communities in three cropping systems through morphological and DNA metabarcoding approaches.
Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.
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32 citing papers in PubMed.
- Nematode Community Profiling in Organic and Conventional Spinach Systems.Plant-environment interactions (Hoboken, N.J.) · 2026Article
- Comparative metabarcoding study performed on the mock soil nematode communities, composed of DESS-preserved and freshly extracted nematodes.Journal of nematology · 2026Article
- Short-term crop rotation interactive effects on soil microbial communities and potato yield under field conditions.Frontiers in microbiology · 2026Article
- DNA source and primer choice affect the reliability of metabarcoding for nematode community profiling in agricultural soils.PloS one · 2026Article
- Plant Functional Group Removal Shifts Soil Nematode Community and Decreases Soil Particulate Organic Carbon in an Alpine Meadow.Plants (Basel, Switzerland) · 2025Article
- Metabarcoding-approach-based profiling reveals dynamic nature of sustainable tillage practices on nematode communities in corn-soybean cropping systems.Scientific reports · 2025Article
- Evolutionary plasticity in nematode Hox gene complements and genomic loci arrangement.Scientific reports · 2024Article
- Emerging Trends and Technologies Used for the Identification, Detection, and Characterisation of Plant-Parasitic Nematode Infestation in Crops.Plants (Basel, Switzerland) · 2024Review
- The Impact of Winter Cover Crops on Soil Nematode Communities and Food Web Stability in Corn and Soybean Cultivation.Microorganisms · 2024Article
- A combined amplicon approach to nematode polyparasitism occurring in captive wild animals in southern China.Parasites & vectors · 2024Article
- Changes in Soil Bacterial and Nematode Communities during Long-term Continuous Cotton Cropping in an Arid Region.Zoological studies · 2024Article
- Next-Generation Sequencing for Evaluating the Soil Nematode Diversity and Its Role in Composting Processes.International journal of molecular sciences · 2023Article
- 18S-NemaBase: Curated 18S rRNA Database of Nematode Sequences.Journal of nematology · 2023Article
- Entomopathogenic nematodes and their symbiotic bacteria: from genes to field uses.Frontiers in insect science · 2023Review
- Large-herbivore nemabiomes: patterns of parasite diversity and sharing.Proceedings. Biological sciences · 2022Article
- Article
- Response of Soil Nematode Community Structure and Function to Monocultures of Pumpkin and Melon.Life (Basel, Switzerland) · 2022Article
- Expanding the RNA virome of nematodes and other soil-inhabiting organisms.Virus evolution · 2022Article
- Phytoparasitic nematodes of organic vegetables in the Argan Biosphere of Souss-Massa (Southern Morocco).Environmental science and pollution research international · 2021Article
- Plant-parasitic nematodes affecting vegetable crops in greenhouses.Saudi journal of biological sciences · 2021Article
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7 authors.
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Abstract
We used complementary morphological and DNA metabarcoding approaches to characterize soil nematode communities in three cropping systems, conventional till (CT), no-till (NT) and organic (ORG), from a long-term field experiment. We hypothesized that organic inputs to the ORG system would promote a more abundant nematode community, and that the NT system would show a more structured trophic system (higher Bongers MI) than CT due to decreased soil disturbance. The abundance of Tylenchidae and Cephalobidae both showed positive correlations to soil organic carbon and nitrogen, which were highest in the ORG system. The density of omnivore-predator and bacterial-feeding nematodes was reduced in NT soils compared to CT, while some plant-parasitic taxa increased. NT soils had similar Bongers MI values to CT, suggesting they contained nematode communities associated with soils experiencing comparable levels of disturbance. Metabarcoding revealed within-family differences in nematode diversity. Shannon and Simpson's index values for the Tylenchidae and Rhabditidae were higher in the ORG system than CT. Compared to morphological analysis, metabarcoding over- or underestimated the prevalence of several nematode families and detected some families not observed based on morphology. Discrepancies between the techniques require further investigation to establish the accuracy of metabarcoding for characterization of soil nematode communities.
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