Evidence map›Paper›PMID 29386560›Full record

ArticleScientific reports2018

High-throughput sequencing analysis revealed the regulation patterns of small RNAs on the development of A. comosus var. bracteatus leaves.

Ying-Yuan Xiong, Jun Ma, Ye-Hua He, Zhen Lin, Xia Li, San-Miao Yu, Rui-Xue Li, Fu-Xing Jiang, Xi Li, Zhuo Huang and 1 more

Abstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. MicroRNAs Roles in Plants Secondary Metabolism.Plant signaling & behavior · 2021
    Review
  4. Article
  5. Article
  6. A role forF1000Research · 2020
    Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Ying-Yuan XiongCollege of Landscape Architecture of Sichuan Agricultural University, Chengdu, Sichuan, 611100, China.
Jun MaCollege of Landscape Architecture of Sichuan Agricultural University, Chengdu, Sichuan, 611100, China. junma365@hotmail.com.
Ye-Hua HeHorticultural Biotechnology College of South China Agricultural University, Guangzhou, Guangdong, 510642, China.
Zhen LinCollege of Landscape Architecture of Sichuan Agricultural University, Chengdu, Sichuan, 611100, China.
Xia LiCollege of Landscape Architecture of Sichuan Agricultural University, Chengdu, Sichuan, 611100, China.
San-Miao YuCollege of Landscape Architecture of Sichuan Agricultural University, Chengdu, Sichuan, 611100, China.
Rui-Xue LiCollege of Landscape Architecture of Sichuan Agricultural University, Chengdu, Sichuan, 611100, China.
Fu-Xing JiangCollege of Landscape Architecture of Sichuan Agricultural University, Chengdu, Sichuan, 611100, China.
Xi LiCollege of Landscape Architecture of Sichuan Agricultural University, Chengdu, Sichuan, 611100, China.
Zhuo HuangCollege of Landscape Architecture of Sichuan Agricultural University, Chengdu, Sichuan, 611100, China.
Ling-Xia SunCollege of Landscape Architecture of Sichuan Agricultural University, Chengdu, Sichuan, 611100, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Studies of the molecular mechanisms involved in the formation of the albino leaf cells are important for understanding the development of chimera leaves in Ananas comosus var. bracteatus. In this study, we identified a total of 163 novel miRNAs involved in the development of complete white (CWh) and complete green (CGr) leaves using high-throughput sequencing method. The potential miRNA target genes were predicted and annotated using the NR, Swiss-Prot, GO, COG, KEGG, KOG and Pfam databases. The main biological processes regulated by miRNAs were revealed. The miRNAs which potentially play important roles in the development of the leaves and the albino of the CWh leaf cells were selected and their expression patterns were analyzed. The expression levels of nine miRNAs and their potential target genes were studied using qRT-PCR. These results will help to elucidate the functional and regulatory roles of miRNAs in the formation of the albino cells and the development of the leaves of A. comosus var. bracteatus. These data may also be helpful as a resource for studies of small RNA in other leaf color chimeric plant species.

Indexed as

Gene Expression Regulation, PlantCarotenoidsChlorophyllCluster AnalysisGene Expression ProfilingGenes, PlantHigh-Throughput Nucleotide SequencingMicroRNAsMolecular Sequence AnnotationPhotosynthesisPigmentationPlant LeavesRNA, PlantSequence Analysis, RNACarotenoidsChlorophyllMicroRNAsRNA, Plant

Identifiers

PMID29386560
PMCPMC5792487

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.