Evidence map›Paper›PMID 29386355›Full record

ArticleThe Journal of biological chemistry2018

The luminal domain of the ER stress sensor protein PERK binds misfolded proteins and thereby triggers PERK oligomerization.

Peng Wang, Jingzhi Li, Jiahui Tao, Bingdong Sha

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 83 papers.

0numbers the graph read from it
0cells of the map it votes in
83citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

83 citing papers in PubMed.

  1. Thbs1Journal of advanced research · 2026
    Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. Review
  7. Review
  8. Article
  9. Review
  10. Review
  11. Article
  12. Review
  13. Review
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review

23 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Peng WangFrom the Department of Cell, Developmental and Integrative Biology (CDIB), University of Alabama at Birmingham, Birmingham, Alabama 35294 and.
Jingzhi LiFrom the Department of Cell, Developmental and Integrative Biology (CDIB), University of Alabama at Birmingham, Birmingham, Alabama 35294 and.
Jiahui TaoFrom the Department of Cell, Developmental and Integrative Biology (CDIB), University of Alabama at Birmingham, Birmingham, Alabama 35294 and.
Bingdong ShaFrom the Department of Cell, Developmental and Integrative Biology (CDIB), University of Alabama at Birmingham, Birmingham, Alabama 35294 and bdsha@uab.edu.

Funding

XRAY CRYSTALLOGRAPHYP30CA013148 · NCI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI MICHAEL JAMES BERTRAM · 1985 to 2026
$165.9M
Structural and Functional Studies for Mitochondrial Protein TranslocationsR01GM080261 · NIGMS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI SHA, BINGDONG · 2007 to 2015
$2.4M
PERK inhibition as a therapeutic approach for Alzheimer's diseaseR21AG058839 · NIA · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI SHA, BINGDONG · 2018 to 2019
$408k
NCI NIH HHS P30 CA013148NIA NIH HHS R21 AG058839NIGMS NIH HHS R01 GM080261
6 · The paper itself

Abstract

PRKR-like endoplasmic reticulum kinase (PERK) is one of the major sensor proteins that detect protein folding imbalances during endoplasmic reticulum (ER) stress. However, it remains unclear how ER stress activates PERK to initiate a downstream unfolded protein response (UPR). Here, we found that PERK's luminal domain can recognize and selectively interact with misfolded proteins but not with native proteins. Screening a phage-display library, we identified a peptide substrate, P16, of the PERK luminal domain and confirmed that P16 efficiently competes with misfolded proteins for binding this domain. To unravel the mechanism by which the PERK luminal domain interacts with misfolded proteins, we determined the crystal structure of the bovine PERK luminal domain complexed with P16 to 2.8-Å resolution. The structure revealed that PERK's luminal domain binds the peptide through a conserved hydrophobic groove. Substitutions within hydrophobic regions of the PERK luminal domain abolished the binding between PERK and misfolded proteins. We also noted that peptide binding results in major conformational changes in the PERK luminal domain that may favor PERK oligomerization. The structure of the PERK luminal domain-P16 complex suggested stacking of the luminal domain that leads to PERK oligomerization and activation via autophosphorylation after ligand binding. Collectively, our structural and biochemical results strongly support a ligand-driven model in which the PERK luminal domain interacts directly with misfolded proteins to induce PERK oligomerization and activation, resulting in ER stress signaling and the UPR.

Indexed as

Protein FoldingProtein MultimerizationAnimalsBinding SitesCattleCells, CulturedCrystallography, X-RayeIF-2 KinaseEndoplasmic Reticulum StressMiceMice, KnockoutPeptide FragmentsPeptide LibraryPhosphorylationProtein BindingProtein ConformationeIF-2 KinasePeptide FragmentsPeptide Librarycrystallographycrystal structureER stress activationeukaryotic translation initiation factor 2α kinase 3PERKsignalingstress responsestructural biologyunfolded protein response (UPR)

Identifiers

PMID29386355
PMCPMC5857997

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.