Evidence map›Paper›PMID 29386288›Full record

ArticleJournal of virology2018

HIV-1 Envelope Glycoproteins from Diverse Clades Differentiate Antibody Responses and Durability among Vaccinees.

Nicole L Yates, Allan C deCamp, Bette T Korber, Hua-Xin Liao, Carmela Irene, Abraham Pinter, James Peacock, Linda J Harris, Sheetal Sawant, Peter Hraber and 12 more

Open access · hybridAbstract read
In one paragraph

Article in Journal of virology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 57 papers.

0numbers the graph read from it
0cells of the map it votes in
57citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

57 citing papers in PubMed, 63 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 11 institutions in 3 countries.

Nicole L Yates *Duke Human Vaccine Institute, Duke University School of Medicine, Durham, North Carolina, USA.
Allan C deCamp *Vaccine and Infectious Disease Division and Statistical Center for HIV/AIDS Research and Prevention, Fred Hutchinson Cancer Research Center, Seattle, Washington, USA.
Bette T KorberTheoretical Biology and Biophysics, Los Alamos National Laboratory, Los Alamos, New Mexico, USA.
Hua-Xin LiaoDuke Human Vaccine Institute, Duke University School of Medicine, Durham, North Carolina, USA.
Carmela IrenePublic Health Research Institute, New Jersey Medical School, Rutgers University, Newark, New Jersey, USA.
Abraham PinterPublic Health Research Institute, New Jersey Medical School, Rutgers University, Newark, New Jersey, USA.
James PeacockDuke Human Vaccine Institute, Duke University School of Medicine, Durham, North Carolina, USA.
Linda J HarrisVaccine and Infectious Disease Division and Statistical Center for HIV/AIDS Research and Prevention, Fred Hutchinson Cancer Research Center, Seattle, Washington, USA.
Sheetal SawantDuke Human Vaccine Institute, Duke University School of Medicine, Durham, North Carolina, USA.
Peter HraberTheoretical Biology and Biophysics, Los Alamos National Laboratory, Los Alamos, New Mexico, USA.ORCID https://orcid.org/0000-0002-2920-4897
Xiaoying ShenDuke Human Vaccine Institute, Duke University School of Medicine, Durham, North Carolina, USA.
Supachai Rerks-NgarmThailand Ministry of Public Health, Department of Disease Control, Bangkok, Thailand.
Punnee PitisuttithumVaccine Trial Center, Mahidol University, Bangkok, Thailand.
Sorachai NitayapanArmed Forces Research Institute of Medical Sciences, Bangkok, Thailand.
Phillip W BermanDepartment of Biomedical Engineering, University of California, Santa Cruz, California, USA.
Merlin L RobbHenry M. Jackson Foundation for the Advancement of Military Medicine, Bethesda, Maryland, USA and the U.S. Military HIV Research Program, Walter Reed Army Institute of Research, Silver Spring, Maryland, USA.
Giuseppe PantaleoService of Immunology and Allergy, Service of Infectious Diseases, Department of Medicine and Swiss Vaccine Research Institute, Lausanne University Hospital, University of Lausanne, Lausanne, Switzerland.
Susan Zolla-PaznerIcahn School of Medicine at Mount Sinai, New York, New York, USA.ORCID https://orcid.org/0000-0002-0750-2666
Barton F HaynesDuke Human Vaccine Institute, Duke University School of Medicine, Durham, North Carolina, USA.
S Munir AlamDuke Human Vaccine Institute, Duke University School of Medicine, Durham, North Carolina, USA.
David C MontefioriDuke Human Vaccine Institute, Duke University School of Medicine, Durham, North Carolina, USA.
Georgia D TomarasDuke Human Vaccine Institute, Duke University School of Medicine, Durham, North Carolina, USA gdt@duke.edu.ORCID https://orcid.org/0000-0001-8076-1931
Duke University · USFred Hutch Cancer Center · USLos Alamos National Laboratory · USRutgers, The State University of New Jersey · USArmed Forces Research Institute of Medical Science · THHenry M. Jackson Foundation · USIcahn School of Medicine at Mount Sinai · USMahidol University · THMinistry of Public Health · THSwiss Vaccine Research Institute · CHUniversity of California, Santa Cruz · US

Funding

LOC: HIV Vaccine Trials NetworkUM1AI068614 · NIAID · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Dan H. Barouch, Lawrence Corey · 2011 to 2026
$1175.6M
LC: HIV Vaccine Trials NetworkUM1AI068618 · NIAID · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Margaret Juliana McElrath · 2011 to 2026
$483.6M
SDMC: HIV Vaccine Trials NetworkUM1AI068635 · NIAID · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Peter B. Gilbert, Yunda Huang · 2011 to 2026
$385.9M
Viral Sequencing CoreU19AI067854 · NIAID · DUKE UNIVERSITY · PI BHARDWAJ, NINA · 2006 to 2011
$290.5M
Virus biology scientific research support componentUM1AI100645 · NIAID · DUKE UNIVERSITY · PI MCMICHAEL, ANDREW JAMES · 2012 to 2018
$204.7M
HVTN Laboratory ProgramU01AI068618 · NIAID · FRED HUTCHINSON CANCER RESEARCH CENTER · PI MCELRATH, MARGARET JULIANA · 2006 to 2010
$82.6M
Viral and Host Determinants of HIV-1 TransmissionU01AI067854 · NIAID · DUKE UNIVERSITY · PI HAYNES, BARTON F · 2005 to 2005
$14.9M
NIAID NIH HHS U01 AI067854NIAID NIH HHS U01 AI068618NIAID NIH HHS U19 AI067854NIAID NIH HHS UM1 AI068614NIAID NIH HHS UM1 AI068618NIAID NIH HHS UM1 AI068635NIAID NIH HHS UM1 AI100645
6 · The paper itself

Abstract

Induction of broadly cross-reactive antiviral humoral responses with the capacity to target globally diverse circulating strains is a key goal for HIV-1 immunogen design. A major gap in the field is the identification of diverse HIV-1 envelope antigens to evaluate vaccine regimens for binding antibody breadth. In this study, we define unique antigen panels to map HIV-1 vaccine-elicited antibody breadth and durability. Diverse HIV-1 envelope glycoproteins were selected based on genetic and geographic diversity to cover the global epidemic, with a focus on sexually acquired transmitted/founder viruses with a tier 2 neutralization phenotype. Unique antigenicity was determined by nonredundancy (Spearman correlation), and antigens were clustered using partitioning around medoids (PAM) to identify antigen diversity. Cross-validation demonstrated that the PAM method was better than selection by reactivity and random selection. Analysis of vaccine-elicited V1V2 binding antibody in longitudinal samples from the RV144 clinical trial revealed the striking heterogeneity among individual vaccinees in maintaining durable responses. These data support the idea that a major goal for vaccine development is to improve antibody levels, breadth, and durability at the population level. Elucidating the level and durability of vaccine-elicited binding antibody breadth needed for protection is critical for the development of a globally efficacious HIV vaccine.

Indexed as

AIDS VaccinesAnimalsGenetic VariationHIV-1HIV AntibodiesHIV Envelope Protein gp120HIV InfectionsHumansMacaca mulattaAIDS Vaccinesgp120 protein, Human immunodeficiency virus 1HIV AntibodiesHIV Envelope Protein gp120antibodyantigenicitydiversitydurabilityHIV-1humoral immunityvaccine

Identifiers

PMID29386288
PMCPMC5874409
OpenAlexW2788651711

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.