Evidence map›Paper›PMID 29383478›Full record

ArticleTransgenic research2018

Generation of a biotinylatable Sox2 mouse model to identify Sox2 complexes in vivo.

Kim Schilders, Evelien Eenjes, Gabriëla Edel, Anne Boerema de Munck, Marjon Buscop van Kempen, Jeroen Demmers, René Wijnen, Dick Tibboel, Robbert J Rottier

Open access · hybridAbstract read
In one paragraph

Article in Transgenic research, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.2field-weighted citation impact, top 48% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. SOX2 and SOX21 in Lung Epithelial Differentiation and Repair.International journal of molecular sciences · 2022
    Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Kim SchildersDepartment of Pediatric Surgery, Erasmus Medical Center-Sophia Children's Hospital, Wytemaweg 80, 3015 CN, Rotterdam, The Netherlands.
Evelien EenjesDepartment of Pediatric Surgery, Erasmus Medical Center-Sophia Children's Hospital, Wytemaweg 80, 3015 CN, Rotterdam, The Netherlands.
Gabriëla EdelDepartment of Pediatric Surgery, Erasmus Medical Center-Sophia Children's Hospital, Wytemaweg 80, 3015 CN, Rotterdam, The Netherlands.
Anne Boerema de MunckDepartment of Pediatric Surgery, Erasmus Medical Center-Sophia Children's Hospital, Wytemaweg 80, 3015 CN, Rotterdam, The Netherlands.
Marjon Buscop van KempenDepartment of Pediatric Surgery, Erasmus Medical Center-Sophia Children's Hospital, Wytemaweg 80, 3015 CN, Rotterdam, The Netherlands.
Jeroen DemmersNetherlands Proteomics Center, Erasmus Medical Center, Rotterdam, The Netherlands.
René WijnenDepartment of Pediatric Surgery, Erasmus Medical Center-Sophia Children's Hospital, Wytemaweg 80, 3015 CN, Rotterdam, The Netherlands.
Dick TibboelDepartment of Pediatric Surgery, Erasmus Medical Center-Sophia Children's Hospital, Wytemaweg 80, 3015 CN, Rotterdam, The Netherlands.
Robbert J RottierDepartment of Pediatric Surgery, Erasmus Medical Center-Sophia Children's Hospital, Wytemaweg 80, 3015 CN, Rotterdam, The Netherlands. r.rottier@erasmusmc.nl.ORCID 0000-0002-9291-4971
Erasmus MC - Sophia Children’s Hospital · NLErasmus MC · NL

Funding

SSWO 641SSWO S14-12
6 · The paper itself

Abstract

Sox2 is a Sry-box containing family member of related transcription factors sharing homology in their DNA binding domain. Sox2 is important during different stages of development, and previously we showed that Sox2 plays an important role in branching morphogenesis and epithelial cell differentiation in lung development. The transcriptional activity of Sox2 depends on its interaction with other proteins, leading to 'complex-specific' DNA binding and transcriptional regulation. In this study, we generated a mouse model containing a biotinylatable-tag targeted at the translational start site of the endogenous Sox2 gene (bioSox2). This tag was biotinylated by the bacterial birA protein and the resulting bioSox2 protein was used to identify associating partners of Sox2 at different phases of lung development in vivo (the Sox2 interactome). Homozygous bioSox2 mice are viable and fertile irrespective of the biotinylation of the bio tag, indicating that the bioSox2 gene is normally expressed and the protein is functional in all tissues. This suggests that partners of Sox2 are most likely able to associate with the bioSox2 protein. BioSox2 complexes were isolated with high affinity using streptavidin beads and analysed by MALDI-ToF mass spectrometry analysis. Several of the identified binding partners are already shown to have a respiratory phenotype. Two of these partners, Wdr5 and Tcf3, were validated to confirm their association in Sox2 complexes. This bioSox2 mouse model will be a valuable tool for isolating in vivo Sox2 complexes from different tissues.

Indexed as

Mice, TransgenicA Kinase Anchor ProteinsAnimalsBasic Helix-Loop-Helix ProteinsBiotinylationBrainDNA-Binding ProteinsHEK293 CellsHumansIntracellular Signaling Peptides and ProteinsLungMice, Inbred C57BLMultiprotein ComplexesNuclear ProteinsProteinsRNA-Binding ProteinsAkap8 protein, mouseA Kinase Anchor ProteinsBasic Helix-Loop-Helix ProteinsDNA-Binding ProteinsIntracellular Signaling Peptides and ProteinsMultiprotein ComplexesNuclear ProteinsProteinsRNA-Binding Proteinsscaffold attachment factor B1, mouseSox2 protein, mouseSOXB1 Transcription FactorsTcf3 protein, mouseWdr5 protein, mouseBiotinylatable tagIn vivo protein complexesKnock-inSox2

Identifiers

PMID29383478
PMCPMC5847153
OpenAlexW2786538870

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.