Evidence map›Paper›PMID 29383109›Full record

ArticleOncotarget2017

Landscape of genome-wide age-related DNA methylation in breast tissue.

Min-Ae Song, Theodore M Brasky, Daniel Y Weng, Joseph P McElroy, Catalin Marian, Michael J Higgins, Christine Ambrosone, Scott L Spear, Adana A Llanos, Bhaskar V S Kallakury and 2 more

Open access · diamondAbstract read
In one paragraph

Article in Oncotarget, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed, 1 pooled it
1.0field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 1 synthesis or guideline pooled it, 47 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Non-coding 886 (Epigenetics · 2024
    Review
  7. Article
  8. Article
  9. Article
  10. Current status and challenges of breast cancer prevention~DNA methylation would lead to groundbreaking progress in breast cancer prevention~.Genes and environment : the official journal of the Japanese Environmental Mutagen Society · 2023
    Review
  11. Article
  12. Article
  13. Article
  14. Application of Novel Breast Biospecimen Cell-Type Adjustment Identifies Shared DNA Methylation Alterations in Breast Tissue and Milk with Breast Cancer-Risk Factors.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2023
    Article
  15. Article
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  18. Article
  19. Breast-Specific Molecular Clocks Comprised ofCancer prevention research (Philadelphia, Pa.) · 2021
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 7 institutions in 2 countries.

Min-Ae SongComprehensive Cancer Center, The Ohio State University and James Cancer Hospital, Columbus, OH, USA.
Theodore M BraskyComprehensive Cancer Center, The Ohio State University and James Cancer Hospital, Columbus, OH, USA.
Daniel Y WengComprehensive Cancer Center, The Ohio State University and James Cancer Hospital, Columbus, OH, USA.
Joseph P McElroyComprehensive Cancer Center, The Ohio State University and James Cancer Hospital, Columbus, OH, USA.
Catalin MarianBiochemistry and Pharmacology Department, Victor Babes University of Medicine and Pharmacy, Timisoara, Romania.
Michael J HigginsDepartment of Molecular and Cellular Biology, Roswell Park Cancer Institute, Buffalo, NY, USA.
Christine AmbrosoneDepartment of Cancer Prevention and Control, Roswell Park Cancer Institute, Buffalo, NY, USA.
Scott L SpearDepartment of Plastic Surgery, Georgetown University, Washington, DC, USA.
Adana A LlanosDepartment of Epidemiology, Rutgers School of Public Health and Rutgers Cancer Institute of New Jersey, New Brunswick, NJ, USA.
Bhaskar V S KallakuryDepartment of Pathology, Georgetown University, Washington, DC, USA.
Jo L FreudenheimDepartment of Epidemiology and Environmental Health, School of Public Health and Health Professions, University at Buffalo, Buffalo, NY, USA.
Peter G ShieldsComprehensive Cancer Center, The Ohio State University and James Cancer Hospital, Columbus, OH, USA.
The Ohio State University · USGeorgetown University · USRoswell Park Comprehensive Cancer Center · USThe Ohio State University Comprehensive Cancer Center – Arthur G. James Cancer Hospital and Richard J. Solove Research Institute · USRutgers, The State University of New Jersey · USUniversity at Buffalo, State University of New York · USVictor Babeș University of Medicine and Pharmacy Timișoara · RO

Funding

Translational Therapeutics Research Program (TT)P30CA016058 · NCI · OHIO STATE UNIVERSITY · PI Tasleem J Padamsee · 1985 to 2026
$132.3M
Two-Spirit Films in Indigenous Cancer HealthP30CA016056 · NCI · ROSWELL PARK CANCER INSTITUTE CORP · PI MARK G FRATTINI · 1985 to 2026
$116.6M
NCI NIH HHS P30 CA016056NCI NIH HHS P30 CA016058
6 · The paper itself

Abstract

Despite known age-related DNA methylation (aDNAm) changes in breast tumors, little is known about aDNAm in normal breast tissues. Breast tissues from a cross-sectional study of 121 cancer-free women, were assayed for genome-wide DNA methylation. mRNA expression was assayed by microarray technology. Analysis of covariance was used to identify aDNAm's. Altered methylation was correlated with expression of the corresponding gene and with DNA methyltransferase protein DNMT3A, assayed by immunohistochemistry. Publically-available TCGA-BRCA data were used for replication. 1,214 aDNAm's were identified; 97% with increased methylation, and all on autosomes. Sites with increased methylation were predominantly in CpG lslands and non-enhancers. aDNAm's with decreased methylation were generally located in intergenic regions, non-CpG Islands, and enhancers. Of the aDNAm's identified, 650 are known to be involved in cancer, including

Indexed as

agebreastcancergenome-wide DNA methylationnormal

Identifiers

PMID29383109
PMCPMC5777721
OpenAlexW2770005448

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.