Evidence map›Paper›PMID 29378960›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2018

Lysosomal enzyme tripeptidyl peptidase 1 destabilizes fibrillar Aβ by multiple endoproteolytic cleavages within the β-sheet domain.

Santiago Solé-Domènech, Ana V Rojas, Gia G Maisuradze, Harold A Scheraga, Peter Lobel, Frederick R Maxfield

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 46 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Santiago Solé-DomènechDepartment of Biochemistry, Weill Cornell Medicine, New York, NY 10065.
Ana V RojasBaker Laboratory of Chemistry and Chemical Biology, Cornell University, Ithaca, NY 14853.
Gia G MaisuradzeBaker Laboratory of Chemistry and Chemical Biology, Cornell University, Ithaca, NY 14853.
Harold A ScheragaBaker Laboratory of Chemistry and Chemical Biology, Cornell University, Ithaca, NY 14853; has5@cornell.edu frmaxfie@med.cornell.edu.
Peter LobelCenter for Advanced Biotechnology and Medicine, Rutgers, The State University of New Jersey, Piscataway, NJ 08854.
Frederick R MaxfieldDepartment of Biochemistry, Weill Cornell Medicine, New York, NY 10065; has5@cornell.edu frmaxfie@med.cornell.edu.
Cornell University · USRutgers, The State University of New Jersey · USWeill Cornell Medicine · US

Funding

Rutgers Mass Spectrometry Core for Integrative Neuroscience ResearchP30NS046593 · NINDS · UNIV OF MED/DENT OF NJ-NJ MEDICAL SCHOOL · PI LOBEL, PETER · 2004 to 2018
$9.9M
INTERNAL BONDIN IN PROTEINSR01GM014312 · NIGMS · CORNELL UNIVERSITY ITHACA · PI MAISURADZE, GIA, RACKOVSKY, SHALOM R · 1985 to 2021
$9.4M
NOVEL LYSOSOMAL ENZYME DEFICIENT IN BATTEN DISEASER01NS037918 · NINDS · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI SLEAT, DAVID EDWARD · 1998 to 2023
$7.3M
RECEPTOR-MEDIATED ENDOCYTOSIS: MECHANISM AND FUNCTIONR37DK027083 · NIDDK · WEILL MEDICAL COLL OF CORNELL UNIV · PI MAXFIELD, FREDERICK R. · 1993 to 2014
$6.5M
A Mass Spectrometry System for Quantitative ProteomicsS10OD016400 · OD · RBHS-ROBERT WOOD JOHNSON MEDICAL SCHOOL · PI LOBEL, PETER · 2014 to 2014
$561k
High Resolution LC-MS/MS SystemS10RR024584 · NCRR · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI LOBEL, PETER · 2009 to 2009
$500k
NCRR NIH HHS S10 RR024584NIDDK NIH HHS R37 DK027083NIGMS NIH HHS R01 GM014312NIH HHS S10 OD016400NINDS NIH HHS P30 NS046593NINDS NIH HHS R01 NS037918
6 · The paper itself

Abstract

Accumulation of amyloid-beta (Aβ), which is associated with Alzheimer's disease, can be caused by excess production or insufficient clearance. Because of its β-sheet structure, fibrillar Aβ is resistant to proteolysis, which would contribute to slow degradation of Aβ plaques in vivo. Fibrillar Aβ can be internalized by microglia, which are the scavenger cells of the brain, but the fibrils are degraded only slowly in microglial lysosomes. Cathepsin B is a lysosomal protease that has been shown to proteolyze fibrillar Aβ. Tripeptidyl peptidase 1 (TPP1), a lysosomal serine protease, possesses endopeptidase activity and has been shown to cleave peptides between hydrophobic residues. Herein, we demonstrate that TPP1 is able to proteolyze fibrillar Aβ efficiently. Mass spectrometry analysis of peptides released from fibrillar Aβ digested with TPP1 reveals several endoproteolytic cleavages including some within β-sheet regions that are important for fibril formation. Using molecular dynamics simulations, we demonstrate that these cleavages destabilize fibrillar β-sheet structure. The demonstration that TPP1 can degrade fibrillar forms of Aβ provides insight into the turnover of fibrillar Aβ and may lead to new therapeutic methods to increase degradation of Aβ plaques.

Indexed as

AminopeptidasesAmyloidAmyloid beta-PeptidesCarbocyaninesDipeptidyl-Peptidases and Tripeptidyl-PeptidasesFluorescent DyesHumansHydrogen-Ion ConcentrationLysosomesMass SpectrometryModels, MolecularMolecular Dynamics SimulationPeptide FragmentsProtein Conformation, beta-StrandProtein DomainsProtein StabilityAminopeptidasesAmyloidAmyloid beta-Peptidesamyloid beta-protein (1-42)Carbocyaninescyanine dye 3Dipeptidyl-Peptidases and Tripeptidyl-PeptidasesFluorescent DyesPeptide FragmentsSerine ProteasesTPP1 protein, humanTripeptidyl-Peptidase 1Alzheimer’s diseaseamyloid-beta plaqueslysosomal enzyme tripeptidyl peptidase 1mass spectrometrymolecular dynamics simulations

Identifiers

PMID29378960
PMCPMC5816203
OpenAlexW2793116254

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.