Evidence map›Paper›PMID 29378911›Full record

ArticleJournal of immunology (Baltimore, Md. : 1950)2018

Massively Parallel Sequencing of Peritoneal and Splenic B Cell Repertoires Highlights Unique Properties of B-1 Cell Antibodies.

Thomas A Prohaska, Xuchu Que, Cody J Diehl, Sabrina Hendrikx, Max W Chang, Kristen Jepsen, Christopher K Glass, Christopher Benner, Joseph L Witztum

Abstract read
In one paragraph

Article in Journal of immunology (Baltimore, Md. : 1950), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed.

  1. B1 Cells for Life.Immunological reviews · 2026
    Review
  2. Article
  3. Article
  4. Do human B-1 lymphocytes truly exist?Frontiers in immunology · 2026
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Noncanonical B Cells: Characteristics of Uncharacteristic B Cells.Journal of immunology (Baltimore, Md. : 1950) · 2023
    Review
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Sex Influences Age-Related Changes in Natural Antibodies and CD5Journal of immunology (Baltimore, Md. : 1950) · 2022
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Thomas A ProhaskaDepartment of Medicine, University of California San Diego, La Jolla, CA 92093.
Xuchu QueDepartment of Medicine, University of California San Diego, La Jolla, CA 92093.ORCID 0000-0002-6751-5493
Cody J DiehlDepartment of Medicine, University of California San Diego, La Jolla, CA 92093.
Sabrina HendrikxDepartment of Medicine, University of California San Diego, La Jolla, CA 92093.ORCID 0000-0001-5962-4975
Max W ChangDepartment of Medicine, University of California San Diego, La Jolla, CA 92093.ORCID 0000-0002-4526-489X
Kristen JepsenInstitute for Genomic Medicine, University of California San Diego, La Jolla, CA 92093; and.
Christopher K GlassDepartment of Medicine, University of California San Diego, La Jolla, CA 92093.ORCID 0000-0003-4344-3592
Christopher BennerDepartment of Medicine, University of California San Diego, La Jolla, CA 92093.
Joseph L WitztumDepartment of Medicine, University of California San Diego, La Jolla, CA 92093; jwitztum@ucsd.edu.

Funding

Transgenic & Knock-out MouseP30DK063491 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI PETER J TONTONOZ · 2003 to 2026
$40.4M
Transcriptional GenomicsP01HL088093 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI WITZTUM, JOSEPH L. · 2008 to 2018
$26.4M
Project 4: APOB-specific CD4 and CD8 T cells exacerbate atherosclerosisP01HL136275 · NHLBI · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI Catherine C Hedrick · 2017 to 2026
$25.5M
EXPERIMENTAL ENDOCRINOLOGY AND METABOLISMT32DK007044 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Amit Majithia · 1986 to 2026
$4.6M
Oxidation-specific nanoparticles for imaging atherosclerosisR01HL119828 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI TSIMIKAS, SOTIRIOS · 2013 to 2017
$2.0M
NHLBI NIH HHS P01 HL088093NHLBI NIH HHS P01 HL136275NHLBI NIH HHS R01 HL119828NIDDK NIH HHS P30 DK063491NIDDK NIH HHS T32 DK007044
6 · The paper itself

Abstract

B-1 cells are a unique subset of B cells that are positively selected for expressing autoreactive BCRs. We isolated RNA from peritoneal (B-1a, B-1b, B-2) and splenic (B-1a, marginal zone, follicular) B cells from C57BL/6 mice and used 5'-RACE to amplify the IgH V region using massively parallel sequencing. By analyzing 379,000 functional transcripts, we demonstrate that B-1a cells use a distinct and restricted repertoire. All B-1 cell subsets, especially peritoneal B-1a cells, had a high proportion of sequences without N additions, suggesting predominantly prenatal development. Their transcripts differed markedly and uniquely contained V

Indexed as

Amino Acid SequenceAnimalsAntibodiesAntibody DiversityBase SequenceB-Lymphocyte SubsetsFemaleGenes, ImmunoglobulinImmunoglobulin Heavy ChainsImmunoglobulin Variable RegionMiceMice, Inbred C57BLSpleenAntibodiesImmunoglobulin Heavy ChainsImmunoglobulin Variable Region

Identifiers

PMID29378911
PMCPMC5821571

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.