Evidence map›Paper›PMID 29378846›Full record

ArticleThe Journal of biological chemistry2018

Single-cell nanobiopsy reveals compartmentalization of mRNAs within neuronal cells.

Eszter N Tóth, Akshar Lohith, Manas Mondal, Jia Guo, Akiyoshi Fukamizu, Nader Pourmand

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Review
  7. Article
  8. Recent advances in single-cell subcellular sampling.Chemical communications (Cambridge, England) · 2023
    Review
  9. Review
  10. Article
  11. Scanning Ion Conductance Microscopy.Chemical reviews · 2021
    Review
  12. Article
  13. Nanoneedle-Based Materials for Intracellular Studies.Advances in experimental medicine and biology · 2021
    Article
  14. Review
  15. Article
  16. Article
  17. Review
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Eszter N TóthPh.D. Program in Human Biology, School of Integrative and Global Majors, Ibaraki 305-8577, Japan; Life Science Center, Tsukuba Advanced Research Alliance, Department of Life and Environmental Sciences, University of Tsukuba, Ibaraki 305-8577, Japan; Department of Biomolecular Engineering, Jack Baskin School of Engineering, University of California at Santa Cruz, Santa Cruz, California 95064.
Akshar LohithDepartment of Biomolecular Engineering, Jack Baskin School of Engineering, University of California at Santa Cruz, Santa Cruz, California 95064.
Manas MondalDepartment of Chemistry and Biochemistry & Biodesign Institute, Arizona State University, Tempe, Arizona 85287.
Jia GuoDepartment of Chemistry and Biochemistry & Biodesign Institute, Arizona State University, Tempe, Arizona 85287.
Akiyoshi FukamizuPh.D. Program in Human Biology, School of Integrative and Global Majors, Ibaraki 305-8577, Japan; Life Science Center, Tsukuba Advanced Research Alliance, Department of Life and Environmental Sciences, University of Tsukuba, Ibaraki 305-8577, Japan.
Nader PourmandDepartment of Biomolecular Engineering, Jack Baskin School of Engineering, University of California at Santa Cruz, Santa Cruz, California 95064. Electronic address: pourmand@soe.ucsc.edu.

Funding

WHOLE YEAST GENOME TRANSCRIPTIONAL AND FUNCTIONAL GENE MAPS--A FEASIBILITY STUDYP01HG000205 · NHGRI · STANFORD UNIVERSITY · PI DAVIS, RONALD WAYNE, HOWE, ROGER THOMAS · 1990 to 2016
$120.9M
Supplement for: NanoGenomics to study molecular mechanisms of neurodegeneration in Human cellsR21NS082927 · NINDS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI POURMAND, NADER · 2013 to 2014
$466k
A NEW ES CELL DELETION RESOURCE AND WILLIAMS SYNDROMEF32HG000205 · NHGRI · JACKSON LABORATORY · PI GOODWIN, NEAL C · 1999 to 1999
–
NHGRI NIH HHS F32 HG000205NHGRI NIH HHS P01 HG000205NINDS NIH HHS R21 NS082927
6 · The paper itself

Abstract

In highly polarized cells such as neurons, compartmentalization of mRNA and of local protein synthesis enables remarkably fast, precise, and local responses to external stimuli. These responses are highly important for neuron growth cone guidance, synapse formation, and regeneration following injury. Because an altered spatial distribution of mRNA can result in mental retardation or neurodegenerative diseases, subcellular transcriptome analysis of neurons could be a useful tool for studying these conditions, but current techniques, such as

Indexed as

Gene Expression ProfilingOligonucleotide Array Sequence AnalysisSequence Analysis, RNABiopsyHMGB3 ProteinHumansInduced Pluripotent Stem CellsNeuritesNeurodegenerative DiseasesRNA, MessengerT-Box Domain ProteinsEOMES protein, humanHMGB3 ProteinRNA, MessengerT-Box Domain Proteinsfunctional genomicsmRNAneuronRNA transporttranscriptomics

Identifiers

PMID29378846
PMCPMC5880154

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.