Evidence map›Paper›PMID 29378572›Full record

ArticleMicrobial cell factories2018

CRISPR/dCas9-mediated transcriptional improvement of the biosynthetic gene cluster for the epothilone production in Myxococcus xanthus.

Ran Peng, Ye Wang, Wan-Wan Feng, Xin-Jing Yue, Jiang-He Chen, Xiao-Zhuang Hu, Zhi-Feng Li, Duo-Hong Sheng, You-Ming Zhang, Yue-Zhong Li

Open access · goldAbstract read
In one paragraph

Article in Microbial cell factories, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
3.9field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 70 citations in OpenAlex.

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  17. Bacterial CRISPR screens for gene function.Current opinion in microbiology · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Ran PengState Key Laboratory of Microbial Technology, School of Life Science, Shandong University, Jinan, 250100, China.
Ye WangState Key Laboratory of Microbial Technology, School of Life Science, Shandong University, Jinan, 250100, China.
Wan-Wan FengState Key Laboratory of Microbial Technology, School of Life Science, Shandong University, Jinan, 250100, China.
Xin-Jing YueState Key Laboratory of Microbial Technology, School of Life Science, Shandong University, Jinan, 250100, China.
Jiang-He ChenState Key Laboratory of Microbial Technology, School of Life Science, Shandong University, Jinan, 250100, China.
Xiao-Zhuang HuState Key Laboratory of Microbial Technology, School of Life Science, Shandong University, Jinan, 250100, China.
Zhi-Feng LiState Key Laboratory of Microbial Technology, School of Life Science, Shandong University, Jinan, 250100, China.
Duo-Hong ShengState Key Laboratory of Microbial Technology, School of Life Science, Shandong University, Jinan, 250100, China.
You-Ming ZhangState Key Laboratory of Microbial Technology, School of Life Science, Shandong University, Jinan, 250100, China.
Yue-Zhong LiState Key Laboratory of Microbial Technology, School of Life Science, Shandong University, Jinan, 250100, China. lilab@sdu.edu.cn.ORCID http://orcid.org/0000-0001-8336-6638
Shandong University · CN

Funding

Key Program of Shandong Natural Science Foundation ZR2016QZ002National Natural Science Foundation of China 31370123National Natural Science Foundation of China 31471183National Natural Science Foundation of China 31670076
6 · The paper itself

Abstract

backgroundThe CRISPR/dCas9 system is a powerful tool to activate the transcription of target genes in eukaryotic or prokaryotic cells, but lacks assays in complex conditions, such as the biosynthesis of secondary metabolites.

resultsIn this study, to improve the transcription of the heterologously expressed biosynthetic genes for the production of epothilones, we established the CRISPR/dCas9-mediated activation technique in Myxococcus xanthus and analyzed some key factors involving in the CRISPR/dCas9 activation. We firstly optimized the cas9 codon to fit the M. xanthus cells, mutated the gene to inactivate the nuclease activity, and constructed the dCas9-activator system in an epothilone producer. We compared the improvement efficiency of different sgRNAs on the production of epothilones and the expression of the biosynthetic genes. We also compared the improvement effects of different activator proteins, the ω and α subunits of RNA polymerase, and the sigma factors σ54 and CarQ. By using a copper-inducible promoter, we determined that higher expressions of dCas9-activator improved the activation effects.

conclusionsOur results showed that the CRISPR/dCas-mediated transcription activation is a simple and broadly applicable technique to improve the transcriptional efficiency for the production of secondary metabolites in microorganisms. This is the first time to construct the CRISPR/dCas9 activation system in myxobacteria and the first time to assay the CRISPR/dCas9 activations for the biosynthesis of microbial secondary metabolites.

Indexed as

Multigene FamilyTranscription, GeneticCRISPR-Associated Protein 9CRISPR-Cas SystemsEpothilonesMyxococcus xanthusPromoter Regions, GeneticRecombinant ProteinsRNA, Guide, CRISPR-Cas SystemsSecondary MetabolismTranscriptional ActivationCRISPR-Associated Protein 9EpothilonesRecombinant ProteinsRNA, Guide, CRISPR-Cas SystemsActivator proteinsBiosynthetic gene clusterCRISPR/dCas9 activationEpothilonesMyxococcus xanthusPromotersgRNAsTranscriptional improvement

Identifiers

PMID29378572
PMCPMC5787926
OpenAlexW2794330673

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.