Evidence map›Paper›PMID 29377949›Full record

ArticlePloS one2018

Molecular epidemiology of human respiratory syncytial virus among children in Japan during three seasons and hospitalization risk of genotype ON1.

Akinobu Hibino, Reiko Saito, Kiyosu Taniguchi, Hassan Zaraket, Yugo Shobugawa, Tamano Matsui, Hiroshi Suzuki, Japanese HRSV Collaborative Study Group

Abstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 1 synthesis or guideline pooled it.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Akinobu HibinoDivision of International Health (Public Health), Niigata University Graduate School of Medical and Dental Sciences, Niigata, Japan.
Reiko SaitoDivision of International Health (Public Health), Niigata University Graduate School of Medical and Dental Sciences, Niigata, Japan.ORCID 0000-0002-1554-8226
Kiyosu TaniguchiPediatrics, National Mie Hospital, Mie, Japan.
Hassan ZaraketDivision of International Health (Public Health), Niigata University Graduate School of Medical and Dental Sciences, Niigata, Japan.
Yugo ShobugawaDivision of International Health (Public Health), Niigata University Graduate School of Medical and Dental Sciences, Niigata, Japan.
Tamano MatsuiInfectious Disease Surveillance Center, National Institute of Infectious Diseases, Tokyo, Japan.
Hiroshi SuzukiSchool of Nursing, Niigata Seiryo University, Niigata, Japan.
Japanese HRSV Collaborative Study Group

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We investigated the genetic diversity, the circulation patterns, and risk for hospital admission of human respiratory syncytial virus (HRSV) strains in Japan between 2012 through 2015. During the study period, 744 HRSV-positive cases were identified by rapid diagnostic test. Of these, 572 samples were positive by real-time PCR; 400 (69.9%) were HRSV-A, and 172 (30.1%) were HRSV-B. HRSV-A and -B alternated as the dominant strain in the subsequent seasons. Phylogenetic tree analysis of the second hyper-variable region of the G protein classified the HRSV-A specimens into NA1 (n = 242) and ON1 (n = 114) genotypes and the HRSV-B specimens into BA9 (n = 60), and BA10 (n = 27). The ON1 genotype, containing a 72-nucleotide duplication in the G protein's second hyper-variable region, was first detected in the 2012-2013 season but it predominated and replaced the older NA1 HRSV-A in the 2014-2015 season, which also coincided with a record number of HRSV cases reported to the National Infectious Disease Surveillance in Japan. The risk of hospitalization was 6.9 times higher for the ON1 genotype compared to NA1. In conclusion, our data showed that the emergence and predominance of the relatively new ON1 genotype in Japan was associated with a record high number of cases and increased risk for hospitalization.

Indexed as

HospitalizationMolecular EpidemiologyGenotypeHumansJapanReal-Time Polymerase Chain ReactionRespiratory Syncytial Virus, HumanRisk Factors

Identifiers

PMID29377949
PMCPMC5788364

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.