Evidence map›Paper›PMID 29376917›Full record

ArticleJournal of fungi (Basel, Switzerland)2015

The Biological Diversity and Production of Volatile Organic Compounds by Stem-Inhabiting Endophytic Fungi of Ecuador.

Susan M Rundell, Daniel J Spakowicz, Alexandra Narváez-Trujillo, Scott A Strobel

Abstract read
In one paragraph

Article in Journal of fungi (Basel, Switzerland), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Susan M RundellDepartment of Ecology and Evolutionary Biology, Yale University, New Haven, CT 06520, USA. susan.rundell@yale.edu.ORCID 0000-0001-7546-1571
Daniel J SpakowiczDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06520, USA. daniel.spakowicz@yale.edu.ORCID 0000-0003-2314-6435
Alexandra Narváez-TrujilloLaboratorio de Biotecnología Vegetal, Pontificia Universidad Católica del Ecuador, Quito 17 01 21 84, Ecuador. anarvaez@puce.edu.ec.ORCID 0000-0001-7534-5378
Scott A StrobelDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06520, USA. scott.strobel@yale.edu.

Funding

MEDICAL INFORMATICS RESEARCH TRAINING AT YALET15LM007056 · NLM · YALE UNIVERSITY · PI Mark Bender Gerstein, LUCILA OHNO-MACHADO · 1987 to 2026
$22.2M
NLM NIH HHS T15 LM007056
6 · The paper itself

Abstract

Fungal endophytes colonize every major lineage of land plants without causing apparent harm to their hosts. Despite their production of interesting and potentially novel compounds, endophytes-particularly those inhabiting stem tissues-are still a vastly underexplored component of microbial diversity. In this study, we explored the diversity of over 1500 fungal endophyte isolates collected from three Ecuadorian ecosystems: lowland tropical forest, cloud forest, and coastal dry forest. We sought to determine whether Ecuador's fungal endophytes are hyperdiverse, and whether that biological diversity is reflected in the endophytes' chemical diversity. To assess this chemical diversity, we analyzed a subset of isolates for their production of volatile organic compounds (VOCs), a representative class of natural products. This study yielded a total of 1526 fungal ITS sequences comprising some 315 operational taxonomic units (OTUs), resulting in a non-asymptotic OTU accumulation curve and characterized by a Fisher's α of 120 and a Shannon Diversity score of 7.56. These figures suggest that the Ecuadorian endophytes are hyperdiverse. Furthermore, the 113 isolates screened for VOCs produced more than 140 unique compounds. These results present a mere snapshot of the remarkable biological and chemical diversity of stem-inhabiting endophytic fungi from a single neotropical country.

Indexed as

biodiversityDiaporthalesendophytic fungimonoterpenoidsneotropicsvolatile organic compounds

Identifiers

PMID29376917
PMCPMC5753131

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.