Evidence map›Paper›PMID 29376201›Full record

ArticlePathology oncology research : POR2019

Diagnostic Value of Circulating Free DNA Integrity and Global Methylation Status in Gall Bladder Carcinoma.

Swati Kumari, Nuzhat Husain, Akash Agarwal, Azfar Neyaz, Sameer Gupta, Arun Chaturvedi, Mohtashim Lohani, Abhinav Arun Sonkar

Abstract read
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In one paragraph

Article in Pathology oncology research : POR, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Review
  6. Review
  7. Gallbladder cancer: Progress in the Indian subcontinent.World journal of clinical oncology · 2024
    Review
  8. Article
  9. Hypobaric hypoxia modulated structural characteristics of circulating cell-free DNA in high-altitude pulmonary edema.American journal of physiology. Lung cellular and molecular physiology · 2024
    Article
  10. Diagnostic value of quantification of cell-free DNA for suspected gallbladder cancer.JGH open : an open access journal of gastroenterology and hepatology · 2023
    Article
  11. Review
  12. Review
  13. Article
  14. Review
  15. Review
  16. Review
  17. Review
  18. Genetic Changes of PJournal of gastrointestinal cancer · 2020
    Article
  19. Liquid biopsies for hepatocellular carcinoma.Translational research : the journal of laboratory and clinical medicine · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Swati KumariDepartment of Pathology, Dr. Ram Manohar Lohia Institute of Medical Sciences, Lucknow, U.P., 226010, India.
Nuzhat HusainDepartment of Pathology, Dr. Ram Manohar Lohia Institute of Medical Sciences, Lucknow, U.P., 226010, India. drnuzhathusain@hotmail.com.
Akash AgarwalDepartment of Surgical Oncology, Dr. Ram Manohar Lohia Institute of Medical Sciences, Lucknow, U.P., 226010, India.
Azfar NeyazDepartment of Pathology, Dr. Ram Manohar Lohia Institute of Medical Sciences, Lucknow, U.P., 226010, India.
Sameer GuptaDepartment of Surgical Oncology, King George's Medical University, Lucknow, U.P., 226003, India.
Arun ChaturvediDepartment of Surgical Oncology, King George's Medical University, Lucknow, U.P., 226003, India.
Mohtashim LohaniDepartment of Biosciences, Integral University, Lucknow, U.P., 226026, India.
Abhinav Arun SonkarDepartment of Surgery, King George's Medical University, Lucknow, U.P., 226003, India.

Funding

Department of Science and Technology (DST) New Delhi, India IF120759
6 · The paper itself

Abstract

The current study investigates the role of circulating free DNA (cfDNA) as a liquid biopsy in diagnosis gall bladder carcinoma (GBC) utilizing levels of long DNA fragments (ALU247) derived from tumor necrosis, short apoptotic fragments (ALU115) denoting total cfDNA and cfDNA integrity denoting ratio of ALU247 and ALU115. The global methylation status of cfDNA was also estimated with the hypothesis that these parameters provide a diagnostic distinction between cancer and non-cancer subjects, with higher or altered values favoring presence of malignancy. Study group included 60 cases of GBC and 36 controls including diseased controls (cholecystitis) and healthy subjects. Median levels of ALU115, ALU247 and cfDNA integrity were significantly different in GBC at 1790.88, 673.75, 0.4718 vs. controls at 840.73, 165.03, 0.1989 ng/ml respectively. Global DNA methylation was not significantly different between GBC at 0.679% and controls at 0.695%. The sensitivity and specificity of ALU 247 in discriminating GBC from controls was highest with a sensitivity, specificity and diagnostic accuracy of 80.0%, 86.1% and 82.2% respectively. Global DNA methylation showed lowest sensitivity of 55.0% and specificity of 50.0%. Clinico-pathological parameters showing significant association with cfDNA integrity, on ROC curve analysis, showed significant diagnostic discrimination of the tumor stage, lymphovascular invasion, disease stage and grade histology. This is a first time analysis of ALU115, ALU247 and cfDNA integrity in the diagnosis of GBC and confirms that the combination of ALU247 and cfDNA integrity provides good sensitivity, specificity and diagnostic accuracy in discriminating GBC from controls as well correlates with aggressive disease parameters.

Indexed as

AdultAgedBiomarkers, TumorCase-Control StudiesCell-Free Nucleic AcidsCholecystitisDNA MethylationDNA, NeoplasmFemaleGallbladder NeoplasmsHumansMaleMiddle AgedROC CurveSensitivity and SpecificityYoung AdultBiomarkers, TumorCell-Free Nucleic AcidsDNA, NeoplasmcfDNA integrityCirculating free DNA (cfDNA)Gall bladder carcinoma (GBC)Global DNA methylationLiquid biopsy

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.