Evidence map›Paper›PMID 29375169›Full record

ArticleJournal of the American Statistical Association2017

Sparse simultaneous signal detection for identifying genetically controlled disease genes.

Sihai Dave Zhao, T Tony Cai, Thomas P Cappola, Kenneth B Margulies, Hongzhe Li

Abstract read
In one paragraph

Article in Journal of the American Statistical Association, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Sihai Dave ZhaoDepartment of Statistics, University of Illinois at Urbana-Champaign.
T Tony CaiDepartment of Statistics, The Wharton School, University of Pennsylvania.
Thomas P CappolaPenn Cardiovascular Institute and Department of Medicine, Perelman School of Medicine, University of Pennsylvania.
Kenneth B MarguliesPenn Cardiovascular Institute and Department of Medicine, Perelman School of Medicine, University of Pennsylvania.
Hongzhe LiDepartment of Biostatistics and Epidemiology, Perelman School of Medicine, University of Pennsylvania.

Funding

Integrative genomics of human heart failureR01HL105993 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI ASHLEY, EUAN A, CAPPOLA, THOMAS P. · 2011 to 2014
$8.9M
Methods for genomic data with graphical structuresR01CA127334 · NCI · UNIVERSITY OF PENNSYLVANIA · PI LEE, HONGZHE · 2007 to 2016
$2.6M
New Machine Learning Tools for Biomedical DataR01GM081535 · NIGMS · UNIVERSITY OF MINNESOTA · PI PAN, WEI, SHEN, XIAOTONG TOM · 2007 to 2014
$2.2M
Statistical Methods for Next-Generation Sequence DataR01GM097505 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI LEE, HONGZHE · 2012 to 2015
$1.2M
National Science Foundation DMS-1208982National Science Foundation DMS-1403708NCI NIH HHS R01 CA127334NHLBI NIH HHS R01 HL105993NIGMS NIH HHS R01 GM081535NIGMS NIH HHS R01 GM097505
6 · The paper itself

Abstract

Genome-wide association studies (GWAS) and differential expression analyses have had limited success in finding genes that cause complex diseases such as heart failure (HF), a leading cause of death in the United States. This paper proposes a new statistical approach that integrates GWAS and expression quantitative trait loci (eQTL) data to identify important HF genes. For such genes, genetic variations that perturb its expression are also likely to influence disease risk. The proposed method thus tests for the presence of simultaneous signals: SNPs that are associated with the gene's expression as well as with disease. An analytic expression for the

Indexed as

eQTLGWASHigher criticismIntegrative genomics

Identifiers

PMID29375169
PMCPMC5784841

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.