Evidence map›Paper›PMID 29374238›Full record

ArticleScientific reports2018

Transcriptional Regulation on Aneuploid Chromosomes in Divers Candida albicans Mutants.

Christopher Tucker, Soumyaroop Bhattacharya, Hironao Wakabayashi, Stanislav Bellaousov, Anatoliy Kravets, Stephen L Welle, Jason Myers, Jeffrey J Hayes, Michael Bulger, Elena Rustchenko

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.2field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Review
  9. Review
  10. The diverse consequences of aneuploidy.Nature cell biology · 2019
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Christopher TuckerDepartment of Biochemistry and Biophysics, University of Rochester Medical Center, Rochester, New York, USA.
Soumyaroop BhattacharyaDivision of Neonatology and Program in Pediatrics Molecular and Personalized Medicine, Department of Pediatrics, University of Rochester Medical Center, Rochester, New York, USA.ORCID http://orcid.org/0000-0003-1140-7845
Hironao WakabayashiDepartment of Biochemistry and Biophysics, University of Rochester Medical Center, Rochester, New York, USA.
Stanislav BellaousovDepartment of Biochemistry and Biophysics, University of Rochester Medical Center, Rochester, New York, USA.
Anatoliy KravetsDepartment of Biochemistry and Biophysics, University of Rochester Medical Center, Rochester, New York, USA.
Stephen L WelleDepartment of Medicine and Center for Pediatric Biochemical Research, Department of Pediatrics, University of Rochester Medical Center, Rochester, New York, USA.
Jason MyersUniversity of Rochester Genomic Research Center, Rochester, New York, USA.
Jeffrey J HayesDepartment of Biochemistry and Biophysics, University of Rochester Medical Center, Rochester, New York, USA.
Michael BulgerCenter for Pediatric Biochemical Research, Department of Pediatrics, University of Rochester Medical Center, Rochester, New York, USA.
Elena RustchenkoDepartment of Biochemistry and Biophysics, University of Rochester Medical Center, Rochester, New York, USA. elena_bulgac@urmc.rochester.edu.
University of Rochester Medical Center · USUniversity of Rochester · US

Funding

Histone Tall Interactions and Functions in ChromatinR01GM052426 · NIGMS · UNIVERSITY OF ROCHESTER · PI HAYES, JEFFREY J · 1995 to 2021
$6.2M
Function of active chromatin domains in erythropoiesisR01DK070687 · NIDDK · UNIVERSITY OF ROCHESTER · PI BULGER, MICHAEL D · 2007 to 2016
$2.5M
Molecular mechanisms of caspofungin resistance in the pathogen Candida albicansR01AI110764 · NIAID · UNIVERSITY OF ROCHESTER · PI RUSTCHENKO, ELENA · 2014 to 2016
$1.0M
NIAID NIH HHS R01 AI110764NIDDK NIH HHS R01 DK070687NIGMS NIH HHS R01 GM052426
6 · The paper itself

Abstract

Candida albicans is a diploid fungus and a predominant opportunistic human pathogen. Notably, C. albicans employs reversible chromosomal aneuploidies as a means of survival in adverse environments. We previously characterized transcription on the monosomic chromosome 5 (Ch5) that arises with adaptation to growth on the toxic sugar sorbose in the mutant Sor125(55). We now extend this analysis to the trisomic hybrid Ch4/7 within Sor125(55) and a diverse group of three mutants harboring a single Ch5. We find a similar pattern of transcriptional changes on either type of aneuploid chromosome within these mutants wherein expression of many genes follows chromosome ploidy, consistent with a direct mechanism to regulate genes important for adaptation to growth. In contrast, a significant number of genes are expressed at the disomic level, implying distinct mechanisms compensating for gene dose on monosomic or trisomic chromosomes consistent with maintaining cell homeostasis. Finally, we find evidence for an additional mechanism that elevates expression of genes on normal disomic Ch4 and Ch7 in mutants to levels commensurate with that found on the trisomic Ch4/7b in Sor125(55). Several of these genes are similarly differentially regulated among mutants, suggesting they play key functions in either maintaining aneuploidy or adaptation to growth conditions.

Indexed as

Adaptation, BiologicalAneuploidyChromosomes, FungalGene Expression RegulationTranscription, GeneticCandida albicansSorboseSorbose

Identifiers

PMID29374238
PMCPMC5786073
OpenAlexW2806576295

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.