ArticleScientific reports2018
Transcriptomic characterization and potential marker development of contrasting sugarcane cultivars.
Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.
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26 citing papers in PubMed, 54 citations in OpenAlex.
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- Regulation of rhizosphere bacterial communities and physiological phenotypes in maize by biochar under deficit irrigation.BMC plant biology · 2026Article
- Article
- Unveiling the Genome of the Diploid Wild Sugarcane RelativeInternational journal of molecular sciences · 2025Article
- Transcriptome and WGCNA analysis revealed the molecular mechanism of drought resistance in new sugarcane varieties.Frontiers in plant science · 2025Article
- Unravelling drought stress adaptation in sugarcane interspecific hybrids: A multi-level analysis.PloS one · 2025Article
- Genomic loci associated with leaf abscission contribute to machine picking and environmental adaptability in upland cotton (Gossypium hirsutum L.).Journal of advanced research · 2024Article
- Factors affecting the production of sugarcane yield and sucrose accumulation: suggested potential biological solutions.Frontiers in plant science · 2024Review
- Enhancing sugarcane's drought resilience: the influence of Streptomycetales and Rhizobiales.Frontiers in plant science · 2024Review
- Adaptation of rhizosphere bacterial communities of drought-resistant sugarcane varieties under different degrees of drought stress.Microbiology spectrum · 2023Article
- A Large-Scale Candidate-Gene Association Mapping for Drought Tolerance and Agronomic Traits in Sugarcane.International journal of molecular sciences · 2023Article
- Transcriptomic and Proteomic Landscape of Sugarcane Response to Biotic and Abiotic Stressors.International journal of molecular sciences · 2023Review
- Review
- Leaf transcriptome profiling of contrasting sugarcane genotypes for drought tolerance under field conditions.Scientific reports · 2022Article
- Transcriptome changes in the developing sugarcane culm associated with high yield and early-season high sugar content.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022Article
- Finger millet RNA-seq reveals differential gene expression associated with tolerance to aluminum toxicity and provides novel genomic resources.Frontiers in plant science · 2022Article
- Field evaluation ofFrontiers in plant science · 2022Article
- The Wild Sugarcane and Sorghum Kinomes: Insights Into Expansion, Diversification, and Expression Patterns.Frontiers in plant science · 2021Article
- Response of Sugarcane Rhizosphere Bacterial Community to Drought Stress.Frontiers in microbiology · 2021Article
- Extensive Variation in Drought-Induced Gene Expression Changes Between Loblolly Pine Genotypes.Frontiers in genetics · 2021Article
Corrections and comments
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Authors and funding
7 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Sugarcane (Saccharum officinarum L.) is an important crop for sugar production and bioenergy worldwide. In this study, we performed transcriptome sequencing for six contrasting sugarcane genotypes involved in leaf abscission, tolerance to pokkah boeng disease and drought stress. More than 465 million high-quality reads were generated, which were de novo assembled into 93,115 unigenes. Based on a similarity search, 43,526 (46.74%) unigenes were annotated against at least one of the public databases. Functional classification analyses showed that these unigenes are involved in a wide range of metabolic pathways. Comparative transcriptome analysis revealed that many unigenes involved in response to abscisic acid and ethylene were up-regulated in the easy leaf abscission genotype, and unigenes associated with response to jasmonic acid and salicylic acid were up-regulated in response to the pokkah boeng disease in the tolerance genotype. Moreover, unigenes related to peroxidase, antioxidant activity and signal transduction were up-regulated in response to drought stress in the tolerant genotype. Finally, we identified a number of putative markers, including 8,630 simple sequence repeats (SSRs) and 442,152 single-nucleotide polymorphisms (SNPs). Our data will be important resources for future gene discovery, molecular marker development, and genome studies in sugarcane.
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