Evidence map›Paper›PMID 29374205›Full record

ArticleScientific reports2018

Vibrio cholerae embraces two major evolutionary traits as revealed by targeted gene sequencing.

Kazuhisa Okada, Warawan Wongboot, Siriporn Chantaroj, Wirongrong Natakuathung, Amonrattana Roobthaisong, Watcharaporn Kamjumphol, Fumito Maruyama, Taichiro Takemura, Ichiro Nakagawa, Makoto Ohnishi and 1 more

Abstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Novel gas producingAccess microbiology · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Kazuhisa OkadaThailand-Japan Research Collaboration Center on Emerging and Re-emerging Infections (RCC-ERI), Nonthaburi, Thailand. kazuhisa@biken.osaka-u.ac.jp.
Warawan WongbootThailand-Japan Research Collaboration Center on Emerging and Re-emerging Infections (RCC-ERI), Nonthaburi, Thailand.
Siriporn ChantarojNational Institute of Health, Department of Medical Sciences, Ministry of Public Health, Nonthaburi, Thailand.
Wirongrong NatakuathungThailand-Japan Research Collaboration Center on Emerging and Re-emerging Infections (RCC-ERI), Nonthaburi, Thailand.
Amonrattana RoobthaisongThailand-Japan Research Collaboration Center on Emerging and Re-emerging Infections (RCC-ERI), Nonthaburi, Thailand.
Watcharaporn KamjumpholThailand-Japan Research Collaboration Center on Emerging and Re-emerging Infections (RCC-ERI), Nonthaburi, Thailand.
Fumito MaruyamaDepartment of Microbiology, Kyoto University Graduate School of Medicine, Sakyo-ku, Kyoto, Japan.ORCID http://orcid.org/0000-0003-2347-616X
Taichiro TakemuraVietnam Research Station, Institute of Tropical Medicine, Nagasaki University, Hanoi, Vietnam.
Ichiro NakagawaDepartment of Microbiology, Kyoto University Graduate School of Medicine, Sakyo-ku, Kyoto, Japan.
Makoto OhnishiDepartment of Bacteriology, National Institute of Infectious Diseases, Shinjuku-ku, Tokyo, Japan.
Shigeyuki HamadaThailand-Japan Research Collaboration Center on Emerging and Re-emerging Infections (RCC-ERI), Nonthaburi, Thailand.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Vibrio cholerae inhabits aquatic environments worldwide and has over 200 recognized serogroups classified by O-polysaccharide specificity. Here, we report that V. cholerae selects either of two genetic traits during their evolution. Sequencing of the specific gene locus MS6_A0927 revealed that 339 of 341 strains of V. cholerae and closely related Vibrio species originating from 34 countries over a century carried either metY (M) (~1,269 bp) or luxR-hchA (LH) (~1,600 bp) genes, and consequently those vibrios were separated into two clusters, M (45.4%) and LH (54.6%). Only two strains contained both M and LH in the same locus. Moreover, extensive polymorphisms in those genes were detected in M and LH with 79 and 46 sequence variations, respectively. V. cholerae O1 strains isolated from cholera outbreaks worldwide, and some non-O1 strains evolving from O1 via exchange of genes encoding cell surface polysaccharides possessed LH alleles. Analysis of polymorphisms in the gene locus implicated a high degree of genetic diversity and identical subpopulations among the V. cholerae species.

Indexed as

Evolution, MolecularGenes, BacterialGenetic VariationGenotypeCholeraCluster AnalysisGlobal HealthHumansSequence Analysis, DNAVibrio cholerae

Identifiers

PMID29374205
PMCPMC5785995

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.