Evidence map›Paper›PMID 29373979›Full record

ArticleVirology journal2018

Identification and genome analysis of tomato chlorotic spot virus and dsRNA viruses from coinfected vegetables in the Dominican Republic by high-throughput sequencing.

Reina Teresa Martínez, Mariana Martins Severo de Almeida, Rosalba Rodriguez, Athos Silva de Oliveira, Fernando Lucas Melo, Renato Oliveira Resende

Abstract read
In one paragraph

Article in Virology journal, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Reina Teresa MartínezUniversidad Autónoma de Santo Domingo-UASD and Instituto Dominicano de Investigaciones Agropecuarias y Florestales - IDIAF, Santo Domingo, Dominican Republic.
Mariana Martins Severo de AlmeidaDepartamento de Biologia Celular, Universidade de Brasília, Brasilia, Brazil.
Rosalba RodriguezUniversidad Autónoma de Santo Domingo-UASD, Santo Domingo, Dominican Republic.
Athos Silva de OliveiraDepartamento de Biologia Celular, Universidade de Brasília, Brasilia, Brazil.
Fernando Lucas MeloDepartamento de Biologia Celular, Universidade de Brasília, Brasilia, Brazil.
Renato Oliveira ResendeDepartamento de Biologia Celular, Universidade de Brasília, Brasilia, Brazil. rresende@unb.br.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Tomato chlorotic spot virus (TCSV) was first reported in the 1980s, having its occurrence limited to Brazil and Argentina. Due to an apparent mild severity in the past, molecular studies concerning TCSV were neglected. However, TCSV has disseminated over the USA and Caribbean countries. In Dominican Republic TCSV has been recently reported on important cultivated crops such as pepper and beans. In this work, we provide the first complete genome of a TCSV isolate from symptomatic plants in Dominican Republic, which was obtained by high-throughput sequencing. In addition, three dsRNA viruses from different virus families were identified coinfecting these plants Bell pepper endornavirus (BPEV), Southern tomato virus (STV) and Pepper cryptic virus 2 (PCV-2). Phylogenetic analysis showed that the Dominican Republic TCSV isolate has a close relationship with other TCSV isolates and a reassortant isolate between TCSV and Groundnut ringspot virus (GRSV), all found in USA. BPEV, STV and PCV-2 isolates from Dominican Republic were close related to corresponding American isolates. The possible biological implications of these virus-mixed infections are discussed.

Indexed as

CoinfectionGenome, ViralDominican RepublicHigh-Throughput Nucleotide SequencingPhenotypePhylogenyPlant DiseasesRNA, Double-StrandedRNA, ViralRNA VirusesTospovirusVegetablesRNA, Double-StrandedRNA, ViralDominican RepublicdsRNA virusesMixed infectionTospovirusVegetables

Identifiers

PMID29373979
PMCPMC5787326

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.