Evidence map›Paper›PMID 29371428›Full record

ArticleScience (New York, N.Y.)2018

An evolutionarily conserved gene family encodes proton-selective ion channels.

Yu-Hsiang Tu, Alexander J Cooper, Bochuan Teng, Rui B Chang, Daniel J Artiga, Heather N Turner, Eric M Mulhall, Wenlei Ye, Andrew D Smith, Emily R Liman

Registry-linked trialAbstract read
In one paragraph

Article in Science (New York, N.Y.), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT05680077 (Methylation Detection of KCNA3 and OTOP2 Genes in Plasma for the Auxiliary Diagnosis of Esophageal Cancer/Precancerous Lesions), which is not on this map. Cited by 150 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
150citing papers in PubMed, 2 pooled it
18.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT05680077 completednot on this mapstarted 2022, after this paper: background citation

Methylation Detection of KCNA3 and OTOP2 Genes in Plasma for the Auxiliary Diagnosis of Esophageal Cancer/Precancerous Lesions: a Clinical Trial

Typeobservational_patient_registrySponsorWuhan Ammunition Life-tech Co., LtdRan2022 to 2023Enrolled1,116ConditionsEsophageal NeoplasmsArmsKCNA3 and OTOP2 Gene Methylation Combined Detection Kit (Fluorescent PCR Method)
3 · Its place in the literature

Who cites it

150 citing papers in PubMed, 2 syntheses or guidelines pooled it, 300 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
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  4. Review
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  8. Review
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  12. Proton-selective conductance and gating of the lysosomal cation channel TMEM175.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  13. Article
  14. Article
  15. Article
  16. Article
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  18. Article
  19. Dual functions of SNAP25 in mouse taste buds.The Journal of physiology · 2025
    Article
  20. Adaptive Responses of Large Yellow CroakerAntioxidants (Basel, Switzerland) · 2025
    Article

90 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Yu-Hsiang TuDepartment of Biological Sciences, Section of Neurobiology, University of Southern California, Los Angeles, CA 90089, USA.ORCID 0000-0003-3507-9938
Alexander J CooperDepartment of Biological Sciences, Section of Neurobiology, University of Southern California, Los Angeles, CA 90089, USA.ORCID 0000-0002-2016-5502
Bochuan TengDepartment of Biological Sciences, Section of Neurobiology, University of Southern California, Los Angeles, CA 90089, USA.ORCID 0000-0001-7918-484X
Rui B ChangDepartment of Biological Sciences, Section of Neurobiology, University of Southern California, Los Angeles, CA 90089, USA.ORCID 0000-0001-6953-2943
Daniel J ArtigaDepartment of Biological Sciences, Section of Neurobiology, University of Southern California, Los Angeles, CA 90089, USA.ORCID 0000-0002-5330-9496
Heather N TurnerDepartment of Biological Sciences, Section of Neurobiology, University of Southern California, Los Angeles, CA 90089, USA.ORCID 0000-0002-5819-5600
Eric M MulhallDepartment of Biological Sciences, Section of Neurobiology, University of Southern California, Los Angeles, CA 90089, USA.
Wenlei YeDepartment of Biological Sciences, Section of Neurobiology, University of Southern California, Los Angeles, CA 90089, USA. liman@usc.edu.ORCID 0000-0002-4694-1493
Andrew D SmithDepartment of Biological Sciences, Section of Molecular and Computational Biology, University of Southern California, Los Angeles, CA 90089, USA.
Emily R LimanDepartment of Biological Sciences, Section of Neurobiology, University of Southern California, Los Angeles, CA 90089, USA. liman@usc.edu.ORCID 0000-0003-4765-5496
University of Southern California · US

Funding

Role of the proton channel OTOP1 in taste transductionR01DC013741 · NIDCD · UNIVERSITY OF SOUTHERN CALIFORNIA · PI Sue C. Kinnamon, EMILY R. LIMAN · 2014 to 2026
$5.7M
Computational Methods for Deep Sequencing Based RBP Binding Motif CharacterizatioR01HG006015 · NHGRI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI PENALVA, LUIZ OTAVIO, SMITH, ANDREW DAVID · 2011 to 2017
$2.6M
Transcriptome profiling of sour taste cellsR21DC012747 · NIDCD · UNIVERSITY OF SOUTHERN CALIFORNIA · PI LIMAN, EMILY R. · 2012 to 2013
$536k
NHGRI NIH HHS R01 HG006015NIDCD NIH HHS R01 DC013741NIDCD NIH HHS R21 DC012747
6 · The paper itself

Abstract

Ion channels form the basis for cellular electrical signaling. Despite the scores of genetically identified ion channels selective for other monatomic ions, only one type of proton-selective ion channel has been found in eukaryotic cells. By comparative transcriptome analysis of mouse taste receptor cells, we identified Otopetrin1 (OTOP1), a protein required for development of gravity-sensing otoconia in the vestibular system, as forming a proton-selective ion channel. We found that murine OTOP1 is enriched in acid-detecting taste receptor cells and is required for their zinc-sensitive proton conductance. Two related murine genes,

Indexed as

AnimalsConserved SequenceDrosophila melanogasterEvolution, MolecularHEK293 CellsHumansIon ChannelsMembrane ProteinsMiceOtolithic MembranePhylogenyProtonsTaste BudsTissue DistributionTranscriptomeIon ChannelsMembrane Proteinsotopetrin 1 protein, mouseProtons

Identifiers

PMID29371428
PMCPMC5845439
OpenAlexW2784791680

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.