Evidence map›Paper›PMID 29370305›Full record

ArticlePLoS pathogens2018

Alterations of HIV-1 envelope phenotype and antibody-mediated neutralization by signal peptide mutations.

Chitra Upadhyay, Roya Feyznezhad, Weiming Yang, Hui Zhang, Susan Zolla-Pazner, Catarina E Hioe

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.9field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 28 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Chitra UpadhyayIcahn School of Medicine at Mount Sinai, Division of Infectious Diseases, New York, New York, United States of America.ORCID 0000-0002-4524-1532
Roya FeyznezhadIcahn School of Medicine at Mount Sinai, Division of Infectious Diseases, New York, New York, United States of America.ORCID 0000-0002-0895-6782
Weiming YangDepartment of Pathology, Johns Hopkins University, Baltimore, Maryland, United States of America.ORCID 0000-0002-5023-2155
Hui ZhangDepartment of Pathology, Johns Hopkins University, Baltimore, Maryland, United States of America.
Susan Zolla-PaznerIcahn School of Medicine at Mount Sinai, Division of Infectious Diseases, New York, New York, United States of America.ORCID 0000-0002-0750-2666
Catarina E HioeIcahn School of Medicine at Mount Sinai, Division of Infectious Diseases, New York, New York, United States of America.
Icahn School of Medicine at Mount Sinai · USJohns Hopkins University · USJames J. Peters VA Medical Center · US

Funding

Shared Resource CoresP01HL107153 · NHLBI · JOHNS HOPKINS UNIVERSITY · PI HART, GERALD WARREN · 2011 to 2017
$16.8M
Vaccines to Induce Functional Antibodies Targeting the V2 Loop P01AI100151 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI WANG, SHIXIA · 2012 to 2017
$15.4M
Contributions of anti-V2 antibodies in protection against HIVR01AI102740 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI HIOE, CATARINA E · 2012 to 2016
$2.5M
Role of signal sequence variation in governing HIV Env FunctionsR21AI124863 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI HIOE, CATARINA E, UPADHYAY, CHITRA · 2017 to 2018
$482k
Targeting Latently Infected Primary Cells using Integrated GlycoproteomicsR21AI122382 · NIAID · JOHNS HOPKINS UNIVERSITY · PI ZHANG, HUI · 2016 to 2017
$446k
BLRD VA I01 BX003860NHLBI NIH HHS P01 HL107153NIAID NIH HHS P01 AI100151NIAID NIH HHS R01 AI102740NIAID NIH HHS R21 AI122382NIAID NIH HHS R21 AI124863NIH HHS P01 AI100151NIH HHS P01HL107153NIH HHS R01 AI102740NIH HHS R21AI122382NIH HHS R21 R21AI124863
6 · The paper itself

Abstract

HIV-1 envelope glycoprotein (Env) mediates virus attachment and entry into the host cells. Like other membrane-bound and secreted proteins, HIV-1 Env contains at its N terminus a signal peptide (SP) that directs the nascent Env to the endoplasmic reticulum (ER) where Env synthesis and post-translational modifications take place. SP is cleaved during Env biosynthesis but potentially influences the phenotypic traits of the Env protein. The Env SP sequences of HIV-1 isolates display high sequence variability, and the significance of such variability is unclear. We postulate that changes in the Env SP influence Env transport through the ER-Golgi secretory pathway and Env folding and/or glycosylation that impact on Env incorporation into virions, receptor binding and antibody recognition. We first evaluated the consequences of mutating the charged residues in the Env SP in the context of infectious molecular clone HIV-1 REJO.c/2864. Results show that three different mutations affecting histidine at position 12 affected Env incorporation into virions that correlated with reduction of virus infectivity and DC-SIGN-mediated virus capture and transmission. Mutations at positions 8, 12, and 15 also rendered the virus more resistant to neutralization by monoclonal antibodies against the Env V1V2 region. These mutations affected the oligosaccharide composition of N-glycans as shown by changes in Env reactivity with specific lectins and by mass spectrometry. Increased neutralization resistance and N-glycan composition changes were also observed when analogous mutations were introduced to another HIV-1 strain, JRFL. To the best of our knowledge, this is the first study showing that certain residues in the HIV-1 Env SP can affect virus neutralization sensitivity by modulating oligosaccharide moieties on the Env N-glycans. The HIV-1 Env SP sequences thus may be under selective pressure to balance virus infectiousness with virus resistance to the host antibody responses. (289 words).

Indexed as

MutationAntibodies, NeutralizingCells, Culturedenv Gene Products, Human Immunodeficiency VirusGlycosylationHEK293 CellsHIV-1HIV AntibodiesHIV InfectionsHumansNeutralization TestsPhenotypePolysaccharidesProtein Sorting SignalsVirus AttachmentAntibodies, Neutralizingenv Gene Products, Human Immunodeficiency VirusHIV AntibodiesPolysaccharidesProtein Sorting Signals

Identifiers

PMID29370305
PMCPMC5800646
OpenAlexW2785215754

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.