Evidence map›Paper›PMID 29370286›Full record

ArticlePloS one2018

Identification of the group IIa WRKY subfamily and the functional analysis of GhWRKY17 in upland cotton (Gossypium hirsutum L.).

Lijiao Gu, Libei Li, Hengling Wei, Hantao Wang, Junji Su, Yaning Guo, Shuxun Yu

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed, 1 pooled it
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 1 synthesis or guideline pooled it, 38 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. A WRKY Transcription Factor,Plants (Basel, Switzerland) · 2025
    Article
  4. Article
  5. Article
  6. International journal of molecular sciences · 2023
    Article
  7. Article
  8. Article
  9. Article
  10. Plants (Basel, Switzerland) · 2022
    Article
  11. A Comprehensive Gene Co-Expression Network Analysis Reveals a Role ofInternational journal of molecular sciences · 2022
    Article
  12. Characterization and expression analysis ofPhysiology and molecular biology of plants : an international journal of functional plant biology · 2022
    Article
  13. Frontiers in plant science · 2022
    Article
  14. Identification of the Group IIIPlants (Basel, Switzerland) · 2021
    Article
  15. Article
  16. Article
  17. Isolation and characterization ofPhysiology and molecular biology of plants : an international journal of functional plant biology · 2021
    Article
  18. Article
  19. Article
  20. Plants (Basel, Switzerland) · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Lijiao GuState Key Laboratory of Cotton Biology, Institute of Cotton Research of CAAS, Anyang, Henan, China.
Libei LiState Key Laboratory of Cotton Biology, Institute of Cotton Research of CAAS, Anyang, Henan, China.
Hengling WeiState Key Laboratory of Cotton Biology, Institute of Cotton Research of CAAS, Anyang, Henan, China.
Hantao WangState Key Laboratory of Cotton Biology, Institute of Cotton Research of CAAS, Anyang, Henan, China.
Junji SuState Key Laboratory of Cotton Biology, Institute of Cotton Research of CAAS, Anyang, Henan, China.
Yaning GuoState Key Laboratory of Cotton Biology, Institute of Cotton Research of CAAS, Anyang, Henan, China.
Shuxun YuState Key Laboratory of Cotton Biology, Institute of Cotton Research of CAAS, Anyang, Henan, China.ORCID 0000-0002-9715-3462
Cotton Research Institute · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

WRKY transcription factors play important roles in plant defense, stress response, leaf senescence, and plant growth and development. Previous studies have revealed the important roles of the group IIa GhWRKY genes in cotton. To comprehensively analyze the group IIa GhWRKY genes in upland cotton, we identified 15 candidate group IIa GhWRKY genes in the Gossypium hirsutum genome. The phylogenetic tree, intron-exon structure, motif prediction and Ka/Ks analyses indicated that most group IIa GhWRKY genes shared high similarity and conservation and underwent purifying selection during evolution. In addition, we detected the expression patterns of several group IIa GhWRKY genes in individual tissues as well as during leaf senescence using public RNA sequencing data and real-time quantitative PCR. To better understand the functions of group IIa GhWRKYs in cotton, GhWRKY17 (KF669857) was isolated from upland cotton, and its sequence alignment, promoter cis-acting elements and subcellular localization were characterized. Moreover, the over-expression of GhWRKY17 in Arabidopsis up-regulated the senescence-associated genes AtWRKY53, AtSAG12 and AtSAG13, enhancing the plant's susceptibility to leaf senescence. These findings lay the foundation for further analysis and study of the functions of WRKY genes in cotton.

Indexed as

Genes, PlantAmino Acid SequenceGene Expression ProfilingGossypiumPhylogenyPlant LeavesReal-Time Polymerase Chain ReactionSequence Homology, Amino AcidTranscription FactorsTranscription Factors

Identifiers

PMID29370286
PMCPMC5784973
OpenAlexW2784453038

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.