Evidence map›Paper›PMID 29370269›Full record

ArticlePloS one2018

The histone demethylase LSD1 regulates inner ear progenitor differentiation through interactions with Pax2 and the NuRD repressor complex.

Dharmeshkumar Patel, Atsushi Shimomura, Sreeparna Majumdar, Matthew C Holley, Eri Hashino

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.6field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 17 citations in OpenAlex.

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  10. Characterization of the transcriptomes ofAmerican journal of stem cells · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Dharmeshkumar PatelDepartment of Otolaryngology-Head and Neck Surgery and Stark Neurosciences Research Institute, Indiana University School of Medicine, Indianapolis, Indiana, United States of America.
Atsushi ShimomuraDepartment of Otolaryngology-Head and Neck Surgery and Stark Neurosciences Research Institute, Indiana University School of Medicine, Indianapolis, Indiana, United States of America.
Sreeparna MajumdarDepartment of Otolaryngology-Head and Neck Surgery and Stark Neurosciences Research Institute, Indiana University School of Medicine, Indianapolis, Indiana, United States of America.
Matthew C HolleyDepartment of Biomedical Science, University of Sheffield, Sheffield, United Kingdom.
Eri HashinoDepartment of Otolaryngology-Head and Neck Surgery and Stark Neurosciences Research Institute, Indiana University School of Medicine, Indianapolis, Indiana, United States of America.ORCID 0000-0002-8359-5788
Indiana University School of MedicineUniversity of Sheffield · GB

Funding

Modeling Inner Ear Differentiation with Pluripotent Stem CellsR01DC013294 · NIDCD · INDIANA UNIVERSITY INDIANAPOLIS · PI Eri Hashino · 2014 to 2026
$7.1M
Modeling Genetic Inner Ear Disorders with Human Pluripotent Stem CellsR01DC015788 · NIDCD · INDIANA UNIVERSITY INDIANAPOLIS · PI HASHINO, ERI · 2017 to 2021
$3.3M
NIDCD NIH HHS R01 DC013294NIDCD NIH HHS R01 DC015788NIH HHS R01 DC013294NIH HHS R01DC015788
6 · The paper itself

Abstract

The histone demethylase LSD1 plays a pivotal role in cellular differentiation, particularly in silencing lineage-specific genes. However, little is known about how LSD1 regulates neurosensory differentiation in the inner ear. Here we show that LSD1 interacts directly with the transcription factor Pax2 to form the NuRD co-repressor complex at the Pax2 target gene loci in a mouse otic neuronal progenitor cell line (VOT-N33). VOT-N33 cells expressing a Pax2-response element reporter were GFP-negative when untreated, but became GFP positive after forced differentiation or treatment with a potent LSD inhibitor. Pharmacological inhibition of LSD1 activity resulted in the enrichment of mono- and di-methylation of H3K4, upregulation of sensory neuronal genes and an increase in the number of sensory neurons in mouse inner ear organoids. Together, these results identify the LSD1/NuRD complex as a previously unrecognized modulator for Pax2-mediated neuronal differentiation in the inner ear.

Indexed as

AnimalsCell DifferentiationCell LineEar, InnerGreen Fluorescent ProteinsHistone DemethylasesMi-2 Nucleosome Remodeling and Deacetylase ComplexMiceNeural Stem CellsPAX2 Transcription FactorProtein Bindingenhanced green fluorescent proteinGreen Fluorescent ProteinsHistone DemethylasesKDM1a protein, mouseMi-2 Nucleosome Remodeling and Deacetylase ComplexPax2 protein, mousePAX2 Transcription Factor

Identifiers

PMID29370269
PMCPMC5784988
OpenAlexW2794407861

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.