Evidence map›Paper›PMID 29370156›Full record

ArticleNature protocols2018

CRISPR/Cas9 genome editing in human hematopoietic stem cells.

Rasmus O Bak, Daniel P Dever, Matthew H Porteus

Abstract read
In one paragraph

Article in Nature protocols, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 202 papers.

0numbers the graph read from it
0cells of the map it votes in
202citing papers in PubMed
14.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

202 citing papers in PubMed, 322 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Red blood cell-derived transglutaminase 2 influences thrombus formation.Research and practice in thrombosis and haemostasis · 2026
    Article
  19. Article
  20. Article

142 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Rasmus O BakDepartment of Pediatrics, Stanford University, Stanford, California, USA.ORCID 0000-0002-7383-0297
Daniel P DeverDepartment of Pediatrics, Stanford University, Stanford, California, USA.
Matthew H PorteusDepartment of Pediatrics, Stanford University, Stanford, California, USA.
Stanford University · US

Funding

Genome Editing by Homologous Recombination to Create HIV Resistant Immune SystemR01AI120766 · NIAID · STANFORD UNIVERSITY · PI PORTEUS, MATTHEW H · 2015 to 2019
$2.0M
Pre-Clinical Development of Nuclease Mediated Gene Therapy for SCIDR01AI097320 · NIAID · STANFORD UNIVERSITY · PI PORTEUS, MATTHEW H · 2013 to 2017
$1.9M
NIAID NIH HHS R01 AI097320NIAID NIH HHS R01 AI120766
6 · The paper itself

Abstract

Genome editing via homologous recombination (HR) (gene targeting) in human hematopoietic stem cells (HSCs) has the power to reveal gene-function relationships and potentially transform curative hematological gene and cell therapies. However, there are no comprehensive and reproducible protocols for targeting HSCs for HR. Herein, we provide a detailed protocol for the production, enrichment, and in vitro and in vivo analyses of HR-targeted HSCs by combining CRISPR/Cas9 technology with the use of rAAV6 and flow cytometry. Using this protocol, researchers can introduce single-nucleotide changes into the genome or longer gene cassettes with the precision of genome editing. Along with our troubleshooting and optimization guidelines, researchers can use this protocol to streamline HSC genome editing at any locus of interest. The in vitro HSC-targeting protocol and analyses can be completed in 3 weeks, and the long-term in vivo HSC engraftment analyses in immunodeficient mice can be achieved in 16 weeks. This protocol enables manipulation of genes for investigation of gene functions during hematopoiesis, as well as for the correction of genetic mutations in HSC transplantation-based therapies for diseases such as sickle cell disease, β-thalassemia, and primary immunodeficiencies.

Indexed as

AnimalsCRISPR-Cas SystemsDependovirusFlow CytometryGene EditingGene TargetingGenetic TherapyHematopoiesisHematopoietic Stem CellsHematopoietic Stem Cell TransplantationHomologous RecombinationHumansMicePolymorphism, Single Nucleotide

Identifiers

PMID29370156
PMCPMC5826598
OpenAlexW2784423079

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.