Evidence map›Paper›PMID 29368217›Full record

ArticleApplied microbiology and biotechnology2018

Inducer-independent production of pectinases in Aspergillus niger by overexpression of the D-galacturonic acid-responsive transcription factor gaaR.

Ebru Alazi, Tim Knetsch, Marcos Di Falco, Ian D Reid, Mark Arentshorst, Jaap Visser, Adrian Tsang, Arthur F J Ram

Open access · hybridAbstract read
In one paragraph

Article in Applied microbiology and biotechnology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
10.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 43 citations in OpenAlex.

  1. Review
  2. Regulation of nutrient utilization in filamentous fungi.Applied microbiology and biotechnology · 2023
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  3. Evaluation ofJournal of fungi (Basel, Switzerland) · 2022
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  4. Discovery of novel secretome CAZymes fromFrontiers in bioengineering and biotechnology · 2022
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  9. Article
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  11. Comparative Characterization ofFrontiers in bioengineering and biotechnology · 2020
    Article
  12. Article
  13. Review
  14. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Ebru AlaziMolecular Microbiology and Biotechnology, Institute of Biology Leiden, Leiden University, Sylviusweg 72, 2333 BE, Leiden, The Netherlands.
Tim KnetschMolecular Microbiology and Biotechnology, Institute of Biology Leiden, Leiden University, Sylviusweg 72, 2333 BE, Leiden, The Netherlands.
Marcos Di FalcoCentre for Structural and Functional Genomics, Concordia University, Québec, Canada.
Ian D ReidCentre for Structural and Functional Genomics, Concordia University, Québec, Canada.
Mark ArentshorstMolecular Microbiology and Biotechnology, Institute of Biology Leiden, Leiden University, Sylviusweg 72, 2333 BE, Leiden, The Netherlands.
Jaap VisserMolecular Microbiology and Biotechnology, Institute of Biology Leiden, Leiden University, Sylviusweg 72, 2333 BE, Leiden, The Netherlands.
Adrian TsangCentre for Structural and Functional Genomics, Concordia University, Québec, Canada.
Arthur F J RamMolecular Microbiology and Biotechnology, Institute of Biology Leiden, Leiden University, Sylviusweg 72, 2333 BE, Leiden, The Netherlands. a.f.j.ram@biology.leidenuniv.nl.
Leiden University · NLConcordia University · CA

Funding

BE-Basic Flagship 10
6 · The paper itself

Abstract

The transcription factor GaaR is needed for the expression of genes required for pectin degradation and transport and catabolism of the main degradation product, D-galacturonic acid (GA) in Aspergillus niger. In this study, we used the strong constitutive gpdA promoter of Aspergillus nidulans to overexpress gaaR in A. niger. Overexpression of gaaR resulted in an increased transcription of the genes encoding pectinases, (putative) GA transporters, and catabolic pathway enzymes even under non-inducing conditions, i.e., in the absence of GA. Exoproteome analysis of a strain overexpressing gaaR showed that this strain secretes highly elevated levels of pectinases when grown in fructose. The genes encoding exo-polygalacturonases were found to be subjected to CreA-mediated carbon catabolite repression, even in the presence of fructose. Deletion of creA in the strain overexpressing gaaR resulted in a further increase in pectinase production in fructose. We showed that GaaR localizes mainly in the nucleus regardless of the presence of an inducer, and that overexpression of gaaR leads to an increased concentration of GaaR in the nucleus.

Indexed as

Gene Expression Regulation, FungalAspergillus nigerFructoseHexuronic AcidsMetabolic EngineeringPolygalacturonasePromoter Regions, GeneticTranscription FactorsFructosegalacturonic acidHexuronic AcidsPolygalacturonaseTranscription FactorsExoproteomeGene regulationGFP fluorescenceTranscription factor concentrationTranscription factor localizationTranscriptome

Identifiers

PMID29368217
PMCPMC5847190
OpenAlexW2793345208

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.