Evidence map›Paper›PMID 29367739›Full record

ArticleNature communications2018

Mixed pyruvate labeling enables backbone resonance assignment of large proteins using a single experiment.

Scott A Robson, Koh Takeuchi, Andras Boeszoermenyi, Paul W Coote, Abhinav Dubey, Sven Hyberts, Gerhard Wagner, Haribabu Arthanari

Abstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Facilitating NMR Resonance Assignment with Metabolic Tampering.bioRxiv : the preprint server for biology · 2026
    Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. EvolvingInternational journal of molecular sciences · 2021
    Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Scott A RobsonDepartment of Biochemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA, 02115, USA.
Koh TakeuchiMolecular Profiling Research Center for Drug Discovery, National Institute of Advanced Industrial Science and Technology, 2-3-26 Aomi, Koto-ku, Tokyo, 135-0064, Japan.
Andras BoeszoermenyiDepartment of Biochemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA, 02115, USA.
Paul W CooteDepartment of Biochemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA, 02115, USA.
Abhinav DubeyDepartment of Biochemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA, 02115, USA.
Sven HybertsDepartment of Biochemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA, 02115, USA.
Gerhard WagnerDepartment of Biochemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA, 02115, USA.
Haribabu ArthanariDepartment of Biochemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA, 02115, USA. hari@hms.harvard.edu.

Funding

T CELL SPECIFIC TRANSCRIPTION COMPLEXESP01GM047467 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI WAGNER, GERHARD · 1992 to 2017
$28.6M
OverallP41EB002026 · NIBIB · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI GRIFFIN, ROBERT GUY · 2003 to 2018
$17.9M
STRUCTURE BASIS OF IMMUNE-CELL SURFACE RECEPTOR FUNCTIONR01AI037581 · NIAID · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI WAGNER, GERHARD · 1996 to 2021
$6.7M
Austrian Science Fund FWF J 3872NIAID NIH HHS R01 AI037581NIBIB NIH HHS P41 EB002026NIGMS NIH HHS P01 GM047467
6 · The paper itself

Abstract

Backbone resonance assignment is a critical first step in the investigation of proteins by NMR. This is traditionally achieved with a standard set of experiments, most of which are not optimal for large proteins. Of these, HNCA is the most sensitive experiment that provides sequential correlations. However, this experiment suffers from chemical shift degeneracy problems during the assignment procedure. We present a strategy that increases the effective resolution of HNCA and enables near-complete resonance assignment using this single HNCA experiment. We utilize a combination of 2-

Indexed as

Carbon-13 Magnetic Resonance SpectroscopyEscherichia coliEscherichia coli ProteinsIsotope LabelingMagnetic Resonance SpectroscopyMaltose-Binding ProteinsPyruvic AcidEscherichia coli ProteinsMaltose-Binding ProteinsPyruvic Acid

Identifiers

PMID29367739
PMCPMC5783931

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.