Evidence map›Paper›PMID 29362475›Full record

ArticleHeredity2018

Lack of evidence for selection favouring MHC haplotypes that combine high functional diversity.

Arnaud Gaigher, Alexandre Roulin, Walid H Gharib, Pierre Taberlet, Reto Burri, Luca Fumagalli

Open access · bronzeAbstract read
In one paragraph

Article in Heredity, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.9field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Article
  3. MHCtools 1.5: Analysis of MHC Sequencing Data in R.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Frontiers in immunology · 2021
    Article
  9. Article
  10. Article
  11. Article
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 3 countries.

Arnaud GaigherLaboratory for Conservation Biology, Department of Ecology and Evolution, University of Lausanne, Biophore, 1015, Lausanne, Switzerland. arnaud.gaigher@gmail.com.
Alexandre RoulinLaboratory for Conservation Biology, Department of Ecology and Evolution, University of Lausanne, Biophore, 1015, Lausanne, Switzerland.
Walid H GharibInterfaculty Bioinformatics Unit, University of Bern, 3012, Bren, Switzerland.
Pierre TaberletCNRS, Laboratoire d'Ecologie Alpine (LECA), Grenoble, 38000, France.
Reto BurriDepartment of Population Ecology, Institute of Ecology and Evolution, Friedrich Schiller University Jena, Dornburger Strasse 159, Jena, 07743, Germany.
Luca FumagalliLaboratory for Conservation Biology, Department of Ecology and Evolution, University of Lausanne, Biophore, 1015, Lausanne, Switzerland.
University of Lausanne · CHCentre National de la Recherche Scientifique · FRFriedrich Schiller University Jena · DEUniversity of Bern · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

High rates of gene duplication and the highest levels of functional allelic diversity in vertebrate genomes are the main hallmarks of the major histocompatibility complex (MHC), a multigene family with a primordial role in pathogen recognition. The usual tight linkage among MHC gene duplicates may provide an opportunity for the evolution of haplotypes that associate functionally divergent alleles and thus grant the transmission of optimal levels of diversity to coming generations. Even though such associations may be a crucial component of disease resistance, this hypothesis has been given little attention in wild populations. Here, we leveraged pedigree data from a barn owl (Tyto alba) population to characterize MHC haplotype structure across two MHC class I (MHC-I) and two MHC class IIB (MHC-IIB) duplicates, in order to test the hypothesis that haplotypes' genetic diversity is higher than expected from randomly associated alleles. After showing that MHC loci are tightly linked within classes, we found limited evidence for shifts towards MHC haplotypes combining high diversity. Neither amino acid nor functional within-haplotype diversity were significantly higher than in random sets of haplotypes, regardless of MHC class. Our results therefore provide no evidence for selection towards high-diversity MHC haplotypes in barn owls. Rather, high rates of concerted evolution may constrain the evolution of high-diversity haplotypes at MHC-I, while, in contrast, for MHC-IIB, fixed differences among loci may provide barn owls with already optimized functional diversity. This suggests that at the MHC-I and MHC-IIB respectively, different evolutionary dynamics may govern the evolution of within-haplotype diversity.

Indexed as

Evolution, MolecularHaplotypesAllelesAmino Acid SequenceGenetic LinkageMajor Histocompatibility ComplexSequence Alignment

Identifiers

PMID29362475
PMCPMC5889407
OpenAlexW2883177999

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.