Evidence map›Paper›PMID 29362419›Full record

ArticleScientific reports2018

Pancreatic gene expression during recovery after pancreatitis reveals unique transcriptome profiles.

Kristy Boggs, Ting Wang, Abrahim I Orabi, Amitava Mukherjee, John F Eisses, Tao Sun, Li Wen, Tanveer A Javed, Farzad Esni, Wei Chen and 1 more

Abstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Kristy BoggsDepartment of Pediatrics, School of Medicine, University of Pittsburgh, Pittsburgh, PA, 15224, USA.
Ting WangDepartment of Pediatrics, School of Medicine, University of Pittsburgh, Pittsburgh, PA, 15224, USA.ORCID http://orcid.org/0000-0003-4712-6658
Abrahim I OrabiDepartment of Pediatrics, School of Medicine, University of Pittsburgh, Pittsburgh, PA, 15224, USA.
Amitava MukherjeeDepartment of Pediatrics, School of Medicine, University of Pittsburgh, Pittsburgh, PA, 15224, USA.
John F EissesDepartment of Pediatrics, School of Medicine, University of Pittsburgh, Pittsburgh, PA, 15224, USA.
Tao SunDepartment of Biostatistics, School of Public Health, University of Pittsburgh, Pittsburgh, PA, 15224, USA.
Li WenDepartment of Pediatrics, School of Medicine, University of Pittsburgh, Pittsburgh, PA, 15224, USA.
Tanveer A JavedDepartment of Pediatrics, School of Medicine, University of Pittsburgh, Pittsburgh, PA, 15224, USA.
Farzad EsniDepartment of Surgery, School of Medicine, University of Pittsburgh, Pittsburgh, PA, 15224, USA.ORCID http://orcid.org/0000-0002-0342-6862
Wei ChenDepartment of Pediatrics, School of Medicine, University of Pittsburgh, Pittsburgh, PA, 15224, USA.ORCID http://orcid.org/0000-0001-7196-8703
Sohail Z HusainDepartment of Pediatrics, School of Medicine, University of Pittsburgh, Pittsburgh, PA, 15224, USA. sohail.husain@chp.edu.

Funding

Calcineurin in pancreatitisR01DK093491 · NIDDK · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI HUSAIN, SOHAIL Z · 2011 to 2020
$3.7M
Evaluation of signals mediating beta-cell regenerationR01DK101413 · NIDDK · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI ESNI, FARZAD · 2015 to 2019
$1.7M
HDACs in pancreatic recovery after injuryR01DK103002 · NIDDK · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI HUSAIN, SOHAIL Z · 2014 to 2017
$1.6M
NIDDK NIH HHS R01 DK093491NIDDK NIH HHS R01 DK101413NIDDK NIH HHS R01 DK103002
6 · The paper itself

Abstract

It is well known that pancreatic recovery after a single episode of injury such as an isolated bout of pancreatitis occurs rapidly. It is unclear, however, what changes are inflicted in such conditions to the molecular landscape of the pancreas. In the caerulein hyperstimulation model of pancreatitis, the murine pancreas has the ability to recover within one week based on histological appearance. In this study, we sought to characterize by RNA-sequencing (RNA-seq) the transcriptional profile of the recovering pancreas up to two weeks post-injury. We found that one week after injury there were 319 differentially expressed genes (DEGs) compared with baseline and that after two weeks there were 53 DEGs. Forty (12.5%) of the DEGs persisted from week one to week two, and another 13 DEGs newly emerged in the second week. Amongst the top up-regulated DEGs were several trypsinogen genes (trypsinogen 4, 5, 12, 15, and 16). To our knowledge, this is the first characterization of the transcriptome during pancreatic recovery by deep sequencing, and it reveals on a molecular basis that there is an ongoing recovery of the pancreas even after apparent histological resolution. The findings also raise the possibility of an emerging novel transcriptome upon pancreatic recovery.

Indexed as

RegenerationAnimalsCeruletideDisease Models, AnimalGene Expression ProfilingGene Expression RegulationGene Regulatory NetworksHumansMicePancreatitisSequence Analysis, RNACeruletide

Identifiers

PMID29362419
PMCPMC5780441

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.