Evidence map›Paper›PMID 29362370›Full record

ArticleNature communications2018

Active and dynamic mitochondrial S-depalmitoylation revealed by targeted fluorescent probes.

Rahul S Kathayat, Yang Cao, Pablo D Elvira, Patrick A Sandoz, María-Eugenia Zaballa, Maya Z Springer, Lauren E Drake, Kay F Macleod, F Gisou van der Goot, Bryan C Dickinson

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 61 papers.

0numbers the graph read from it
0cells of the map it votes in
61citing papers in PubMed
4.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

61 citing papers in PubMed, 99 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. S-palmitoylation in ferroptosis: molecular mechanisms, modulators, and interplay with autophagy.Apoptosis : an international journal on programmed cell death · 2026
    Review
  7. Review
  8. Review
  9. Profiling the landscape of cysteine posttranslational modifications in brain aging and neurodegeneration.Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics · 2025
    Review
  10. Article
  11. Review
  12. Review
  13. Palmitoylation in cardiovascular diseases: Molecular mechanism and therapeutic potential.International journal of cardiology. Heart & vasculature · 2025
    Review
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Mechanisms and functions of protein S-acylation.Nature reviews. Molecular cell biology · 2024
    Review
  20. Depalmitoylation and cell physiology: APT1 as a mediator of metabolic signals.American journal of physiology. Cell physiology · 2024
    Review

1 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Rahul S KathayatDepartment of Chemistry, The University of Chicago, Chicago, IL, 60637, USA.
Yang CaoDepartment of Chemistry, The University of Chicago, Chicago, IL, 60637, USA.
Pablo D ElviraDepartment of Chemistry, The University of Chicago, Chicago, IL, 60637, USA.
Patrick A SandozGlobal Health Institute, School of Life Sciences, Ecole Polytechnique Fédérale de Lausanne, Lausanne, CH-1015, Switzerland.
María-Eugenia ZaballaGlobal Health Institute, School of Life Sciences, Ecole Polytechnique Fédérale de Lausanne, Lausanne, CH-1015, Switzerland.
Maya Z SpringerThe Ben May Department for Cancer Research, The University of Chicago, Chicago, IL, 60637, USA.
Lauren E DrakeThe Committee on Cancer Biology, The University of Chicago, Chicago, IL, 60637, USA.
Kay F MacleodThe Ben May Department for Cancer Research, The University of Chicago, Chicago, IL, 60637, USA.
F Gisou van der GootGlobal Health Institute, School of Life Sciences, Ecole Polytechnique Fédérale de Lausanne, Lausanne, CH-1015, Switzerland. Gisou.vandergoot@epfl.ch.ORCID http://orcid.org/0000-0002-8522-274X
Bryan C DickinsonDepartment of Chemistry, The University of Chicago, Chicago, IL, 60637, USA. Dickinson@uchicago.edu.ORCID http://orcid.org/0000-0002-9616-1911
University of Chicago · USÉcole Polytechnique Fédérale de Lausanne · CH

Funding

VIRAL ONCOLOGY CORE FACILITYP30CA014599 · NCI · UNIVERSITY OF CHICAGO · PI CHIEN-MIN KAO · 1985 to 2026
$122.1M
Multi-Disciplinary Training Grant in Cancer ResearchT32CA009594 · NCI · UNIVERSITY OF CHICAGO · PI KAY F MACLEOD, Scott A. Oakes · 1989 to 2026
$11.5M
Rapid selection approaches to understand and reprogram proteins and peptidesR35GM119840 · NIGMS · UNIVERSITY OF CHICAGO · PI Bryan Dickinson · 2016 to 2026
$4.8M
Functions of BNIP3 in lipid metabolism in the liver and in hepatocellular carcinomaR01CA200310 · NCI · UNIVERSITY OF CHICAGO · PI KAY F MACLEOD · 2016 to 2026
$3.6M
(PQ5) Consequences of imbalanced mitophagy and mitochondrial biogenesis in cancerR01CA216242 · NCI · UNIVERSITY OF CHICAGO · PI MACLEOD, KAY F · 2017 to 2021
$1.6M
European Research Council 340260NCI NIH HHS P30 CA014599NCI NIH HHS R01 CA200310NCI NIH HHS R01 CA216242NCI NIH HHS T32 CA009594NIGMS NIH HHS R35 GM119840
6 · The paper itself

Abstract

The reversible modification of cysteine residues by thioester formation with palmitate (S-palmitoylation) is an abundant lipid post-translational modification (PTM) in mammalian systems. S-palmitoylation has been observed on mitochondrial proteins, providing an intriguing potential connection between metabolic lipids and mitochondrial regulation. However, it is unknown whether and/or how mitochondrial S-palmitoylation is regulated. Here we report the development of mitoDPPs, targeted fluorescent probes that measure the activity levels of "erasers" of S-palmitoylation, acyl-protein thioesterases (APTs), within mitochondria of live cells. Using mitoDPPs, we discover active S-depalmitoylation in mitochondria, in part mediated by APT1, an S-depalmitoylase previously thought to reside in the cytosol and on the Golgi apparatus. We also find that perturbation of long-chain acyl-CoA cytoplasm and mitochondrial regulatory proteins, respectively, results in selective responses from cytosolic and mitochondrial S-depalmitoylases. Altogether, this work reveals that mitochondrial S-palmitoylation is actively regulated by "eraser" enzymes that respond to alterations in mitochondrial lipid homeostasis.

Indexed as

Mitochondrial DynamicsA549 CellsAcyl Coenzyme AFluorescent DyesHEK293 CellsHeLa CellsHumansKineticsLipoylationMCF-7 CellsMicroscopy, ConfocalMitochondriaRNA InterferenceThiolester HydrolasesAcyl Coenzyme AFluorescent DyesLYPLA1 protein, humanThiolester Hydrolases

Identifiers

PMID29362370
PMCPMC5780395
OpenAlexW2802331240

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.