Evidence map›Paper›PMID 29361974›Full record

ArticleBMC research notes2018

Localization and dimer stability of a newly identified microbial rhodopsin from a polar, non-motile green algae.

Peeyush Ranjan, Suneel Kateriya

Open access · goldAbstract read
In one paragraph

Article in BMC research notes, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.4field-weighted citation impact, top 45% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 2 countries.

Peeyush RanjanDepartment of Biochemistry, University of Delhi South Campus, Benito Juarez Road, New Delhi, 110021, India.
Suneel KateriyaDepartment of Biochemistry, University of Delhi South Campus, Benito Juarez Road, New Delhi, 110021, India. skateriya@jnu.ac.in.ORCID http://orcid.org/0000-0001-5428-4297
University of Delhi · IN

Funding

University Grants Commission JRF
6 · The paper itself

Abstract

objectiveThe eukaryotic plasma membrane localized light-gated proton-pumping rhodopsins possesses great optogenetic applications for repolarization (silencing) of the neuronal activity simply by light illumination. Very few plasma membrane localized proton-pumping rhodopsins of a eukaryotic origin are known that have optogenetic potential. Our objective was to identify and characterize microbial rhodopsin of an eukaryotic origin that expresses on plasma membrane. The plasma membrane localized light-gated proton pump of an eukaryotic origin hold great promise to be used as an optogenetic tools for the neurobiology.

resultsHere, we had characterized the cellular expression and membrane localization of a new rhodopsin in Antarctican algae Coccomyxa subellipsoidea. It is the first algal ion pumping rhodopsin that localizes to the plasma membrane of the eukaryotic cells. Coccomyxa subellipsoidea rhodopsin exists in the monomeric and dimeric state both the in vivo and in vitro. The dimeric form of the Coccomyxa subellipsoidea rhodopsin is resistant to heat and detergent denaturants.

Indexed as

Algal ProteinsAmino Acid SequenceAntarctic RegionsCell MembraneChlorophytaImmunoblottingLightProtein MultimerizationProtein StabilityProton PumpsRhodopsinSequence Homology, Amino AcidAlgal ProteinsProton PumpsRhodopsinChlorella vulgarisCoccomyxa subellipsoideaLocalization of the microbial rhodopsin in eukaryotesOptogeneticsProton-pumping rhodopsin

Identifiers

PMID29361974
PMCPMC5781313
OpenAlexW2797534088

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.