Evidence map›Paper›PMID 29361790›Full record

ReviewGenes2018

Single-Cell Genomic Analysis in Plants.

Yuxuan Yuan, HueyTyng Lee, Haifei Hu, Armin Scheben, David Edwards

Abstract readReview
In one paragraph

Review in Genes, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
  2. Review
  3. Review
  4. Review
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Yuxuan YuanSchool of Biological Sciences and Institute of Agriculture, The University of Western Australia, Perth, WA 6009, Australia. yuxuan.yuan@research.uwa.edu.au.ORCID 0000-0003-0741-4196
HueyTyng LeeSchool of Biological Sciences and Institute of Agriculture, The University of Western Australia, Perth, WA 6009, Australia. jenny.lee@uwa.edu.au.ORCID 0000-0001-8561-3161
Haifei HuSchool of Biological Sciences and Institute of Agriculture, The University of Western Australia, Perth, WA 6009, Australia. haifei.hu@research.uwa.edu.au.
Armin SchebenSchool of Biological Sciences and Institute of Agriculture, The University of Western Australia, Perth, WA 6009, Australia. armin.scheben@research.uwa.edu.au.
David EdwardsSchool of Biological Sciences and Institute of Agriculture, The University of Western Australia, Perth, WA 6009, Australia. dave.edwards@uwa.edu.au.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Individual cells in an organism are variable, which strongly impacts cellular processes. Advances in sequencing technologies have enabled single-cell genomic analysis to become widespread, addressing shortcomings of analyses conducted on populations of bulk cells. While the field of single-cell plant genomics is in its infancy, there is great potential to gain insights into cell lineage and functional cell types to help understand complex cellular interactions in plants. In this review, we discuss current approaches for single-cell plant genomic analysis, with a focus on single-cell isolation, DNA amplification, next-generation sequencing, and bioinformatics analysis. We outline the technical challenges of analysing material from a single plant cell, and then examine applications of single-cell genomics and the integration of this approach with genome editing. Finally, we indicate future directions we expect in the rapidly developing field of plant single-cell genomic analysis.

Indexed as

computational algorithmsDNA sequencingplantsingle cell analysistechnologies

Identifiers

PMID29361790
PMCPMC5793201

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.