Evidence map›Paper›PMID 29361127›Full record

ArticleJournal of experimental botany2018

Contrasting genetic regulation of plant development in wild barley grown in two European environments revealed by nested association mapping.

Paul Herzig, Andreas Maurer, Vera Draba, Rajiv Sharma, Fulvia Draicchio, Hazel Bull, Linda Milne, William T B Thomas, Andrew J Flavell, Klaus Pillen

Open access · hybridAbstract read
In one paragraph

Article in Journal of experimental botany, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
8.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 41 citations in OpenAlex.

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  9. Major flowering time genes of barley: allelic diversity, effects, and comparison with wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021
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  13. Multi-parent multi-environment QTL analysis: an illustration with the EU-NAM Flint population.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Paul HerzigInstitute of Agricultural and Nutritional Sciences, Martin Luther University Halle-Wittenberg, Halle, Germany.
Andreas MaurerInstitute of Agricultural and Nutritional Sciences, Martin Luther University Halle-Wittenberg, Halle, Germany.
Vera DrabaInstitute of Agricultural and Nutritional Sciences, Martin Luther University Halle-Wittenberg, Halle, Germany.
Rajiv SharmaDivision of Plant Sciences, University of Dundee at JHI, Invergowrie, Dundee, Scotland, UK.
Fulvia DraicchioDivision of Plant Sciences, University of Dundee at JHI, Invergowrie, Dundee, Scotland, UK.
Hazel BullThe James Hutton Institute (JHI), Invergowrie, Dundee, Scotland, UK.
Linda MilneThe James Hutton Institute (JHI), Invergowrie, Dundee, Scotland, UK.
William T B ThomasThe James Hutton Institute (JHI), Invergowrie, Dundee, Scotland, UK.
Andrew J FlavellDivision of Plant Sciences, University of Dundee at JHI, Invergowrie, Dundee, Scotland, UK.
Klaus PillenInstitute of Agricultural and Nutritional Sciences, Martin Luther University Halle-Wittenberg, Halle, Germany.
Martin Luther University Halle-Wittenberg · DEJames Hutton Institute · GBUniversity of Dundee · GB

Funding

Biotechnology and Biological Sciences Research Council BB/M004856/1
6 · The paper itself

Abstract

Barley is cultivated more widely than the other major world crops because it adapts well to environmental constraints, such as drought, heat, and day length. To better understand the genetic control of local adaptation in barley, we studied development in the nested association mapping population HEB-25, derived from crossing 25 wild barley accessions with the cultivar 'Barke'. HEB-25 was cultivated in replicated field trials in Dundee (Scotland) and Halle (Germany), differing in regard to day length, precipitation, and temperature. Applying a genome-wide association study, we located 60 and 66 quantitative trait locus (QTL) regions regulating eight plant development traits in Dundee and Halle, respectively. A number of QTLs could be explained by known major genes such as PHOTOPERIOD 1 (Ppd-H1) and FLOWERING LOCUS T (HvFT-1) that regulate plant development. In addition, we observed that developmental traits in HEB-25 were partly controlled via genotype × environment and genotype × donor interactions, defined as location-specific and family-specific QTL effects. Our findings indicate that QTL alleles are available in the wild barley gene pool that show contrasting effects on plant development, which may be deployed to improve adaptation of cultivated barley to future environmental changes.

Indexed as

Gene-Environment InteractionGenome-Wide Association StudyClimate ChangeEnvironmentGermanyHordeumPlant ProteinsQuantitative Trait LociScotlandPlant Proteins

Identifiers

PMID29361127
PMCPMC5888909
OpenAlexW2792020060

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.