Evidence map›Paper›PMID 29360975›Full record

ArticleGenome biology and evolution2018

Comparative Genomics of Tenacibaculum dicentrarchi and "Tenacibaculum finnmarkense" Highlights Intricate Evolution of Fish-Pathogenic Species.

Sébastien Bridel, Anne-Berit Olsen, Hanne Nilsen, Jean-François Bernardet, Guillaume Achaz, Ruben Avendaño-Herrera, Eric Duchaud

Open access · goldAbstract read
In one paragraph

Article in Genome biology and evolution, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 58 citations in OpenAlex.

  1. Article
  2. International journal of systematic and evolutionary microbiology · 2025
    Article
  3. Draft genome sequences ofMicrobiology resource announcements · 2025
    Article
  4. Article
  5. Review
  6. Review
  7. Genomics ofPathogens (Basel, Switzerland) · 2023
    Article
  8. Isolation and characterization of a novelFrontiers in microbiology · 2023
    Article
  9. Article
  10. Article
  11. Tenacibaculosis caused byFrontiers in cellular and infection microbiology · 2022
    Review
  12. Article
  13. Article
  14. Advancements in CharacterizingPathogens (Basel, Switzerland) · 2020
    Review
  15. Article
  16. Article
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 3 countries.

Sébastien BridelVIM, INRA, Université Paris-Saclay, Jouy-en-Josas, France.
Anne-Berit OlsenNorwegian Veterinary Institute, Bergen, Norway.
Hanne NilsenNorwegian Veterinary Institute, Bergen, Norway.
Jean-François BernardetVIM, INRA, Université Paris-Saclay, Jouy-en-Josas, France.
Guillaume AchazAtelier de Bioinformatique, UMR 7205 ISyEB, MNHN-UPMC-CNRS-EPHE, Muséum National d'Histoire Naturelle, Paris, France.
Ruben Avendaño-HerreraLaboratorio de Patología de Organismos Acuáticos y Biotecnología Acuícola, Departamento de Ciencias Biológicas, Facultad de Ciencias Biológicas, Universidad Andrés Bello, Viña del Mar, Chile.
Eric DuchaudVIM, INRA, Université Paris-Saclay, Jouy-en-Josas, France.
Norwegian Veterinary Institute · NOUniversité Paris-Saclay · FRCentre National de la Recherche Scientifique · FRUniversidad Andrés Bello · CLUniversité de Versailles Saint-Quentin-en-Yvelines · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The genus Tenacibaculum encompasses several species pathogenic for marine fish. Tenacibaculum dicentrarchi and "Tenacibaculum finnmarkense" (Quotation marks denote species that have not been validly named.) were retrieved from skin lesions of farmed fish such as European sea bass or Atlantic salmon. They cause a condition referred to as tenacibaculosis and severe outbreaks and important fish losses have been reported in Spanish, Norwegian, and Chilean marine farms. We report here the draft genomes of the T. dicentrarchi and "T. finnmarkense" type strains. These genomes were compared with draft genomes from field isolates retrieved from Chile and Norway and with previously published Tenacibaculum genomes. We used Average Nucleotide Identity and core genome-based phylogeny as a proxy index for species boundary delineation. This work highlights evolution of closely related fish-pathogenic species and suggests that homologous recombination likely contributes to genome evolution. It also corrects the species affiliation of strain AYD7486TD claimed by Grothusen et al. (2016).

Indexed as

AnimalsFish DiseasesFishesFlavobacteriaceae InfectionsGenome, BacterialGenomicsPhylogenyTenacibaculumevolutionfish pathogensgenomestenacibaculosisTenacibaculumvirulence

Identifiers

PMID29360975
PMCPMC5793721
OpenAlexW2790014247

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.