Evidence map›Paper›PMID 29360959›Full record

ArticleGenome biology and evolution2018

Disentangling the Causes for Faster-X Evolution in Aphids.

Julie Jaquiéry, Jean Peccoud, Tiphaine Ouisse, Fabrice Legeai, Nathalie Prunier-Leterme, Anais Gouin, Pierre Nouhaud, Jennifer A Brisson, Ryan Bickel, Swapna Purandare and 7 more

Open access · goldAbstract read
In one paragraph

Article in Genome biology and evolution, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
6.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 56 citations in OpenAlex.

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  11. 100 years of Haldane's rule.Journal of evolutionary biology · 2023
    Review
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  14. Nonadaptive molecular evolution of seminal fluid proteins in Drosophila.Evolution; international journal of organic evolution · 2021
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 9 institutions in 4 countries.

Julie JaquiéryINRA UMR IGEPP Domaine de la Motte, Le Rheu, France.
Jean PeccoudCNRS UMR 7267 Ecologie et Biologie des Interactions, Equipe Ecologie Evolution Symbiose, Université de Poitiers, France.
Tiphaine OuisseCNRS UMR 6553 ECOBIO, Université de Rennes 1, France.
Fabrice LegeaiINRA UMR IGEPP Domaine de la Motte, Le Rheu, France.
Nathalie Prunier-LetermeINRA UMR IGEPP Domaine de la Motte, Le Rheu, France.
Anais GouinINRA UMR IGEPP Domaine de la Motte, Le Rheu, France.
Pierre NouhaudInstitute of Population Genetics, Vetmeduni Vienna, Vienna, Austria.
Jennifer A BrissonDepartment of Biology, University of Rochester.
Ryan BickelDepartment of Biology, University of Rochester.
Swapna PurandareMultidisciplinary Center for Advance Research and Studies (MCARS), Jamia Millia Islamia, New Delhi, India.
Julie PoulainCommissariat à l'Energie Atomique (CEA), Institut de Génomique (IG), Genoscope, Evry, France.
Christophe BattailCommissariat à l'Energie Atomique (CEA), Institut de Génomique (IG), Centre National de Génotypage (CNG), Evry, France.
Claire LemaitreINRIA Centre Rennes - Bretagne Atlantique, GenOuest, Rennes, France.
Lucie MieuzetINRA UMR IGEPP Domaine de la Motte, Le Rheu, France.
Gael Le TrionnaireINRA UMR IGEPP Domaine de la Motte, Le Rheu, France.
Jean-Christophe SimonINRA UMR IGEPP Domaine de la Motte, Le Rheu, France.
Claude RispeBIOEPAR, INRA, ONIRIS, La Chantrerie, Nantes, France.
Institut de Génétique, Environnement et Protection des Plantes · FRCentre Inria de l'Université de Rennes · FRCommissariat à l'Énergie Atomique et aux Énergies Alternatives · FRUniversity of Rochester · USÉcologie et Biologie des Interactions · FREcosystèmes, Biodiversité, Evolution · FRInstitut national de recherche en sciences et technologies du numérique · FRJamia Millia Islamia · INUniversity of Veterinary Medicine Vienna · AT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The faster evolution of X chromosomes has been documented in several species, and results from the increased efficiency of selection on recessive alleles in hemizygous males and/or from increased drift due to the smaller effective population size of X chromosomes. Aphids are excellent models for evaluating the importance of selection in faster-X evolution because their peculiar life cycle and unusual inheritance of sex chromosomes should generally lead to equivalent effective population sizes for X and autosomes. Because we lack a high-density genetic map for the pea aphid, whose complete genome has been sequenced, we first assigned its entire genome to the X or autosomes based on ratios of sequencing depth in males (X0) to females (XX). Then, we computed nonsynonymous to synonymous substitutions ratios (dN/dS) for the pea aphid gene set and found faster evolution of X-linked genes. Our analyses of substitution rates, together with polymorphism and expression data, showed that relaxed selection is likely to be the greatest contributor to faster-X because a large fraction of X-linked genes are expressed at low rates and thus escape selection. Yet, a minor role for positive selection is also suggested by the difference between substitution rates for X and autosomes for male-biased genes (but not for asexual female-biased genes) and by lower Tajima's D for X-linked compared with autosomal genes with highly male-biased expression patterns. This study highlights the relevance of organisms displaying alternative chromosomal inheritance to the understanding of forces shaping genome evolution.

Indexed as

Chromosomes, InsectEvolution, MolecularAnimalsAphidsBiological EvolutionFemaleGene Expression ProfilingGenes, X-LinkedGenetic DriftGenome, InsectMalePolymorphism, GeneticReproductionReproduction, AsexualSex ChromosomesX Chromosomedriftevolutionary rateshemizygosityselectionsex-biased expressionsex chromosome

Identifiers

PMID29360959
PMCPMC5798017
OpenAlexW2949594671

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.