Evidence map›Paper›PMID 29360040›Full record

ArticleeLife2018

Endosomal Rab cycles regulate Parkin-mediated mitophagy.

Koji Yamano, Chunxin Wang, Shireen A Sarraf, Christian Münch, Reika Kikuchi, Nobuo N Noda, Yohei Hizukuri, Masato T Kanemaki, Wade Harper, Keiji Tanaka and 2 more

Open access · goldAbstract read
In one paragraph

Article in eLife, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 105 papers.

0numbers the graph read from it
0cells of the map it votes in
105citing papers in PubMed
12.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

105 citing papers in PubMed, 166 citations in OpenAlex.

  1. Article
  2. Species-dependent activities of the PINK1-parkin axis.Translational neurodegeneration · 2026
    Review
  3. Article
  4. Review
  5. Frontotemporal dementia associated CHCHD10Cell death & disease · 2026
    Article
  6. Article
  7. Rab12 is a regulator of mitophagy and mitochondrial homeostasis.bioRxiv : the preprint server for biology · 2026
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Rab14 promotes Parkin-mediated mitophagy.Molecular biology of the cell · 2025
    Article
  13. Article
  14. Article
  15. Progress on multifunctional transmembrane protein ATG9A.Cell communication and signaling : CCS · 2025
    Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

45 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 3 countries.

Koji YamanoUbiquitin Project, Tokyo Metropolitan Institute of Medical Science, Tokyo, Japan.ORCID 0000-0002-4692-161X
Chunxin WangBiochemistry Section, Surgical Neurology Branch, National Institute of Neurological Disorders and Stroke, National Institutes of Health, Bethesda, United States.
Shireen A SarrafBiochemistry Section, Surgical Neurology Branch, National Institute of Neurological Disorders and Stroke, National Institutes of Health, Bethesda, United States.
Christian MünchDepartment of Cell Biology, Harvard Medical School, Boston, United States.ORCID 0000-0003-3832-090X
Reika KikuchiUbiquitin Project, Tokyo Metropolitan Institute of Medical Science, Tokyo, Japan.
Nobuo N NodaInstitute of Microbial Chemistry, Tokyo, Japan.ORCID 0000-0002-6940-8069
Yohei HizukuriInstitute for Frontier Life and Medical Sciences, Kyoto University, Kyoto, Japan.
Masato T KanemakiDivision of Molecular Cell Engineering, National Institute of Genetics, Research Organization of Information and Systems, Mishima, Japan.
Wade HarperDepartment of Cell Biology, Harvard Medical School, Boston, United States.ORCID 0000-0002-6944-7236
Keiji TanakaLaboratory of Protein Metabolism, Tokyo Metropolitan Institute of Medical Science, Tokyo, Japan.
Noriyuki MatsudaUbiquitin Project, Tokyo Metropolitan Institute of Medical Science, Tokyo, Japan.
Richard J YouleBiochemistry Section, Surgical Neurology Branch, National Institute of Neurological Disorders and Stroke, National Institutes of Health, Bethesda, United States.ORCID 0000-0001-9117-5241
National Institutes of Health · USTokyo Metropolitan Institute of Medical Science · JPBoston University · USKyoto University · JPMicrobial Chemistry Research Foundation · JPNational Institute of Genetics · JP

Funding

Role of mitochondria in neurodegenerative diseasesZIANS003123 · NINDS · NATIONAL INSTITUTE OF NEUROLOGICAL DISORDERS AND STROKE · PI YOULE, RICHARD JAMES · 2011 to 2025
$28.8M
Mechanisms of AutophagyZIANS003127 · NINDS · NATIONAL INSTITUTE OF NEUROLOGICAL DISORDERS AND STROKE · PI YOULE, RICHARD JAMES · 2011 to 2025
$16.7M
Japan Science and Technology Agency JPMJCR13M7Japan Society for the Promotion of Science 16K15095Japan Society for the Promotion of Science JP15H01196Japan Society for the Promotion of Science JP16K18545Japan Society for the Promotion of Science JP26000014Japan Society for the Promotion of Science JP26111729Japan Society for the Promotion of Science JP26840033NINDS NIH HHS Intramural program
6 · The paper itself

Abstract

Damaged mitochondria are selectively eliminated by mitophagy. Parkin and PINK1, gene products mutated in familial Parkinson's disease, play essential roles in mitophagy through ubiquitination of mitochondria. Cargo ubiquitination by E3 ubiquitin ligase Parkin is important to trigger selective autophagy. Although autophagy receptors recruit LC3-labeled autophagic membranes onto damaged mitochondria, how other essential autophagy units such as ATG9A-integrated vesicles are recruited remains unclear. Here, using mammalian cultured cells, we demonstrate that RABGEF1, the upstream factor of the endosomal Rab GTPase cascade, is recruited to damaged mitochondria via ubiquitin binding downstream of Parkin. RABGEF1 directs the downstream Rab proteins, RAB5 and RAB7A, to damaged mitochondria, whose associations are further regulated by mitochondrial Rab-GAPs. Furthermore, depletion of RAB7A inhibited ATG9A vesicle assembly and subsequent encapsulation of the mitochondria by autophagic membranes. These results strongly suggest that endosomal Rab cycles on damaged mitochondria are a crucial regulator of mitophagy through assembling ATG9A vesicles.

Indexed as

MitophagyAutophagy-Related ProteinsEndosomesGuanine Nucleotide Exchange FactorsHeLa CellsHumansMembrane ProteinsProtein Interaction Mapsrab5 GTP-Binding Proteinsrab7 GTP-Binding Proteinsrab GTP-Binding ProteinsUbiquitin-Protein LigasesVesicular Transport ProteinsATG9A protein, humanAutophagy-Related ProteinsGuanine Nucleotide Exchange FactorsMembrane Proteinsparkin proteinRAB5C protein, humanrab5 GTP-Binding Proteinsrab7 GTP-Binding Proteinsrab7 GTP-binding proteins, humanRABGEF1 protein, humanrab GTP-Binding ProteinsUbiquitin-Protein LigasesVesicular Transport Proteinsautophagycell biologyhumanmitochondriaParkinRab7ubiquitin

Identifiers

PMID29360040
PMCPMC5780041
OpenAlexW2784886035

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.