Evidence map›Paper›PMID 29360038›Full record

ArticleeLife2018

FoxP2 isoforms delineate spatiotemporal transcriptional networks for vocal learning in the zebra finch.

Zachary Daniel Burkett, Nancy F Day, Todd Haswell Kimball, Caitlin M Aamodt, Jonathan B Heston, Austin T Hilliard, Xinshu Xiao, Stephanie A White

Open access · goldAbstract read
In one paragraph

Article in eLife, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.4field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. FOXP transcription factors in vertebrate brain development, function, and disorders.Wiley interdisciplinary reviews. Developmental biology · 2020
    Review
  10. Article
  11. Article
  12. Birdsong as a window into language origins and evolutionary neuroscience.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2020
    Review
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Zachary Daniel BurkettDepartment of Integrative Biology and Physiology, University of California, Los Angeles, Los Angeles, United States.ORCID http://orcid.org/0000-0002-5153-485X
Nancy F DayDepartment of Integrative Biology and Physiology, University of California, Los Angeles, Los Angeles, United States.ORCID http://orcid.org/0000-0001-5367-9473
Todd Haswell KimballDepartment of Integrative Biology and Physiology, University of California, Los Angeles, Los Angeles, United States.
Caitlin M AamodtDepartment of Integrative Biology and Physiology, University of California, Los Angeles, Los Angeles, United States.
Jonathan B HestonDepartment of Integrative Biology and Physiology, University of California, Los Angeles, Los Angeles, United States.ORCID http://orcid.org/0000-0001-7479-1122
Austin T HilliardDepartment of Biology, Stanford University, Stanford, Stanford, United States.
Xinshu XiaoDepartment of Integrative Biology and Physiology, University of California, Los Angeles, Los Angeles, United States.
Stephanie A WhiteDepartment of Integrative Biology and Physiology, University of California, Los Angeles, Los Angeles, United States.ORCID http://orcid.org/0000-0002-3490-2294
University of California, Los Angeles · USStanford University · US

Funding

Neuroendocrinology, Sex Differences, and ReproductionT32HD007228 · NICHD · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI ARNOLD, ARTHUR P · 1985 to 2015
$3.9M
Formation and Function of Circuitry for Vocal LearningR01MH070712 · NIMH · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI WHITE, STEPHANIE ANN · 2005 to 2017
$3.1M
NICHD NIH HHS 5T32HD007228NICHD NIH HHS T32 HD007228NIMH NIH HHS R01 MH070712NIMH NIH HHS RO1MH07012NIMH NIH HHS RO1MH070712
6 · The paper itself

Abstract

Human speech is one of the few examples of vocal learning among mammals yet ~half of avian species exhibit this ability. Its neurogenetic basis is largely unknown beyond a shared requirement for FoxP2 in both humans and zebra finches. We manipulated FoxP2 isoforms in Area X, a song-specific region of the avian striatopallidum analogous to human anterior striatum, during a critical period for song development. We delineate, for the first time, unique contributions of each isoform to vocal learning. Weighted gene coexpression network analysis of RNA-seq data revealed gene modules correlated to singing, learning, or vocal variability. Coexpression related to singing was found in juvenile and adult Area X whereas coexpression correlated to learning was unique to juveniles. The confluence of learning and singing coexpression in juvenile Area X may underscore molecular processes that drive vocal learning in young zebra finches and, by analogy, humans.

Indexed as

Gene Regulatory NetworksLearningVocalization, AnimalAnimalsCorpus StriatumFinchesForkhead Transcription FactorsGene Expression ProfilingProtein IsoformsSequence Analysis, RNASpatio-Temporal AnalysisForkhead Transcription FactorsProtein IsoformsArea Xcomputational biologyneuroscienceRNA-seqsystems biologyTaeniopygia guttatavocal learningWGCNA

Identifiers

PMID29360038
PMCPMC5826274
OpenAlexW2785107610

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.