Evidence map›Paper›PMID 29358708›Full record

ArticleNature immunology2018

Selective autophagy of the adaptor TRIF regulates innate inflammatory signaling.

Mohammad Samie, Junghyun Lim, Erik Verschueren, Joshua M Baughman, Ivan Peng, Aaron Wong, Youngsu Kwon, Yasin Senbabaoglu, Jason A Hackney, Mary Keir and 4 more

Abstract read
PubMed Publisher
In one paragraph

Article in Nature immunology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 91 papers.

0numbers the graph read from it
0cells of the map it votes in
91citing papers in PubMed
6.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

91 citing papers in PubMed, 129 citations in OpenAlex.

  1. Article
  2. Role of autophagy in antiviral innate immunity.Cellular & molecular biology letters · 2026
    Review
  3. Article
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  5. Review
  6. Article
  7. Roles of Deubiquitinases OTUD3 and OTUD5 in Inflammatory Bowel Diseases.International journal of molecular sciences · 2025
    Review
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Autophagy and Bacterial infections.Autophagy reports · 2025
    Review
  17. Article
  18. Article
  19. Review
  20. Article

31 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 1 institution in 1 country.

Mohammad SamieDepartment of Cancer Immunology, Genentech, South San Francisco, CA, USA.
Junghyun LimDepartment of Cancer Immunology, Genentech, South San Francisco, CA, USA.
Erik VerschuerenDepartment of Microchemistry, Proteomics & Lipidomics, Genentech, South San Francisco, CA, USA.
Joshua M BaughmanDepartment of Microchemistry, Proteomics & Lipidomics, Genentech, South San Francisco, CA, USA.
Ivan PengDepartment of Translational Immunology, Genentech, South San Francisco, CA, USA.
Aaron WongDepartment of Translational Immunology, Genentech, South San Francisco, CA, USA.
Youngsu KwonDepartment of Translational Immunology, Genentech, South San Francisco, CA, USA.
Yasin SenbabaogluDepartment of Bioinformatics & Computational Biology, Genentech, South San Francisco, CA, USA.
Jason A HackneyDepartment of Bioinformatics & Computational Biology, Genentech, South San Francisco, CA, USA.ORCID 0000-0002-5922-563X
Mary KeirBiomarker Discovery OMNI, Genentech, South San Francisco, CA, USA.
Brent MckenzieDepartment of Translational Immunology, Genentech, South San Francisco, CA, USA.
Donald S KirkpatrickDepartment of Microchemistry, Proteomics & Lipidomics, Genentech, South San Francisco, CA, USA.
Menno van Lookeren CampagneDepartment of Immunology, Genentech, South San Francisco, CA, USA.
Aditya MurthyDepartment of Cancer Immunology, Genentech, South San Francisco, CA, USA. murthy.aditya@gene.com.ORCID 0000-0002-6130-9568
Gene Therapy Laboratory · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Defective autophagy is linked to diseases such as rheumatoid arthritis, lupus and inflammatory bowel disease (IBD). However, the mechanisms by which autophagy limits inflammation remain poorly understood. Here we found that loss of the autophagy-related gene Atg16l1 promoted accumulation of the adaptor TRIF and downstream signaling in macrophages. Multiplex proteomic profiling identified SQSTM1 and Tax1BP1 as selective autophagy-related receptors that mediated the turnover of TRIF. Knockdown of Tax1bp1 increased production of the cytokines IFN-β and IL-1β. Mice lacking Atg16l1 in myeloid cells succumbed to lipopolysaccharide-mediated sepsis but enhanced their clearance of intestinal Salmonella typhimurium in an interferon receptor-dependent manner. Human macrophages with the Crohn's disease-associated Atg16l1 variant T300A exhibited more production of IFN-β and IL-1β. An elevated interferon-response gene signature was observed in patients with IBD who were resistant to treatment with an antibody to the cytokine TNF. These findings identify selective autophagy as a key regulator of signaling via the innate immune system.

Indexed as

Adaptor Proteins, Vesicular TransportAnimalsAutophagyAutophagy-Related ProteinsCrohn DiseaseFemaleHumansImmunity, InnateInflammationMacrophagesMaleMiceMice, TransgenicSignal TransductionAdaptor Proteins, Vesicular TransportAutophagy-Related Proteins

Identifiers

PMID29358708
OpenAlexW2789737735

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.