ArticleScientific reports2018
Homeolog expression analysis in an allotriploid non-model crop via integration of transcriptomics and proteomics.
Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.
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Who cites it
16 citing papers in PubMed.
- Banana breeding by genome design.Journal of integrative plant biology · 2025Review
- Date palm diverts organic solutes for root osmotic adjustment and protects leaves from oxidative damage in early drought acclimation.Journal of experimental botany · 2025Article
- Integrative multi-omics analyses of date palm (Phoenix dactylifera) roots and leaves reveal how the halophyte land plant copes with sea water.The plant genome · 2024Article
- Phenotyping, genetics, and "-omics" approaches to unravel and introgress enhanced resistance against apple scab (Horticulture research · 2024Article
- Review
- Unravelling the diversity in water usage among wild banana species in response to vapour pressure deficit.Frontiers in plant science · 2023Article
- From fruit growth to ripening in plantain: a careful balance between carbohydrate synthesis and breakdown.Journal of experimental botany · 2022Article
- GeMo: a web-based platform for the visualization and curation of genome ancestry mosaics.Database : the journal of biological databases and curation · 2022Article
- The banana genome hub: a community database for genomics in the Musaceae.Horticulture research · 2022Article
- Isolation and functional characterization of a glucose-6-phosphate/phosphate translocator (IbG6PPT1) from sweet potato (Ipomoea batatas (L.) Lam.).BMC plant biology · 2021Article
- A digital sensor to measure real-time leaf movements and detect abiotic stress in plants.Plant physiology · 2021Article
- Comparative Transcriptome and Expression Profiling of Resistant and Susceptible Banana Cultivars during Infection byInternational journal of molecular sciences · 2021Article
- A Recently Formed TriploidFrontiers in genetics · 2020Article
- Systematic Multi-Omics Integration (MOI) Approach in Plant Systems Biology.Frontiers in plant science · 2020Review
- Effect of paleopolyploidy and allopolyploidy on gene expression in banana.BMC genomics · 2019Article
- Using Growth and Transpiration Phenotyping Under Controlled Conditions to Select Water Efficient Banana Genotypes.Frontiers in plant science · 2019Article
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Authors and funding
6 authors.
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Abstract
The fate of doubled genes, from allopolyploid or autopolyploid origin, is controlled at multiple levels, resulting in the modern day cultivars. We studied the root growth of 3 different triploid banana cultivars under control and osmotic stress conditions. The root growth of the allopolyploid ABB cultivar was 42% higher under control and 61% higher under osmotic stress. By integrating transcriptomics and proteomics, we studied the gene expression of all 3 cultivars, resulting in 2,749 identified root proteins. 383 gene loci displayed genotype specific differential expression whereof 252 showed at least one Single Amino Acid Polymorphism (SAAP). In the ABB cultivar, allele expressions supposedly follow a 1/3 and 2/3 pattern for respectively the A and the B allele. Using transcriptome read alignment to assess the homeoallelic contribution we found that 63% of the allele specific genes deviated from this expectation. 32 gene loci even did not express the A allele. The identified ABB allele- specific proteins correlate well with the observed growth phenotype as they are enriched in energy related functions such as ATP metabolic processes, nicotinamide nucleotide metabolic processes, and glycolysis.
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