Evidence map›Paper›PMID 29358325›Full record

ArticleThe Journal of biological chemistry2018

Mapping allosteric linkage to channel gating by extracellular domains in the human epithelial sodium channel.

Mahmoud Shobair, Konstantin I Popov, Yan L Dang, Hong He, M Jackson Stutts, Nikolay V Dokholyan

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact, top 99% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 1 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Mahmoud ShobairFrom the Program in Molecular and Cellular Biophysics.
Konstantin I PopovDepartment of Biochemistry and Biophysics, and.
Yan L DangCystic Fibrosis and Pulmonary Diseases Research and Treatment Center, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599.
Hong HeCystic Fibrosis and Pulmonary Diseases Research and Treatment Center, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599.
M Jackson StuttsCystic Fibrosis and Pulmonary Diseases Research and Treatment Center, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina 27599 jack_stutts@med.unc.edu.
Nikolay V DokholyanFrom the Program in Molecular and Cellular Biophysics, dokh@unc.edu.
University of North Carolina at Chapel Hill · USInstitute of Molecular Biology and Biophysics · RU

Funding

Purinergic Control of CFTR-ENaC Interactions in Alveolar EpitheliaP01HL110873 · NHLBI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI BOUCHER, RICHARD CHARLES · 2012 to 2016
$10.7M
Retroviral Genomic RNA Dimer Structure and FunctionR01GM064803 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI WEEKS, KEVIN M · 2002 to 2016
$3.7M
Engineering allostery for in vivo protein controlR01GM123247 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI DOKHOLYAN, NIKOLAY · 2017 to 2019
$1.5M
Integrating cheminformatics and molecular simulations for virtual drug screeningR01GM114015 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI DOKHOLYAN, NIKOLAY · 2016 to 2019
$1.1M
NHLBI NIH HHS P01 HL110873NIGMS NIH HHS R01 GM064803NIGMS NIH HHS R01 GM114015NIGMS NIH HHS R01 GM123247
6 · The paper itself

Abstract

The epithelial sodium channel (ENaC) mediates sodium absorption in lung, kidney, and colon epithelia. Channels in the ENaC/degenerin family possess an extracellular region that senses physicochemical changes in the extracellular milieu and allosterically regulates the channel opening. Proteolytic cleavage activates the ENaC opening, by the removal of specific segments in the finger domains of the α- and γ ENaC-subunits. Cleavage causes perturbations in the extracellular region that propagate to the channel gate. However, it is not known how the channel structure mediates the propagation of activation signals through the extracellular sensing domains. Here, to identify the structure-function determinants that mediate allosteric ENaC activation, we performed MD simulations, thiol modification of residues substituted by cysteine, and voltage-clamp electrophysiology recordings. Our simulations of an ENaC heterotetramer, α

Indexed as

Models, MolecularAllosteric RegulationAnimalsCells, CulturedEnzyme ActivationEpithelial Sodium ChannelsHumansMolecular Dynamics SimulationMutagenesis, Site-DirectedMutationOocytesPatch-Clamp TechniquesProtein ConformationProtein FoldingProtein Interaction Domains and MotifsProtein Interaction MappingEpithelial Sodium ChannelsRecombinant ProteinsSCNN1A protein, humanSCNN1B protein, humanSCNN1G protein, humanallosteric regulationallosterydiscrete molecular dynamicsENaC/degenerin familyepithelial sodium channel (ENaC)ion channelmolecular dynamicsmolecular modelingproteolytic activation

Identifiers

PMID29358325
PMCPMC5846138
OpenAlexW2784391196

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.