Evidence map›Paper›PMID 29358323›Full record

ArticleThe Journal of biological chemistry2018

Unraveling the molecular mechanism of interactions of the Rho GTPases Cdc42 and Rac1 with the scaffolding protein IQGAP2.

E Sila Ozdemir, Hyunbum Jang, Attila Gursoy, Ozlem Keskin, Zhigang Li, David B Sacks, Ruth Nussinov

Open access · hybridAbstract readComparative Study
In one paragraph

Article in The Journal of biological chemistry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 45 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Structural Dynamics of Rho GTPases.Journal of molecular biology · 2025
    Review
  6. Cancers · 2025
    Article
  7. Article
  8. Review
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. The mechanism of activation of MEK1 by B-Raf and KSR1.Cellular and molecular life sciences : CMLS · 2022
    Article
  16. Review
  17. Selectivity Determinants of RHO GTPase Binding to IQGAPs.International journal of molecular sciences · 2021
    Article
  18. Article
  19. Mechanistic Differences of Activation of Rac1The journal of physical chemistry. B · 2021
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 3 countries.

E Sila OzdemirFrom the Departments of Chemical and Biological Engineering and.
Hyunbum Jangthe Cancer and Inflammation Program, Leidos Biomedical Research, Inc., Frederick National Laboratory for Cancer Research, NCI-Frederick, Frederick, Maryland 21702.
Attila GursoyComputer Engineering, Koc University, Istanbul 34450, Turkey, agursoy@ku.edu.tr.
Ozlem KeskinFrom the Departments of Chemical and Biological Engineering and.
Zhigang Lithe Department of Laboratory Medicine, National Institutes of Health, Bethesda, Maryland 20892, and.
David B Sacksthe Department of Laboratory Medicine, National Institutes of Health, Bethesda, Maryland 20892, and.
Ruth Nussinovthe Cancer and Inflammation Program, Leidos Biomedical Research, Inc., Frederick National Laboratory for Cancer Research, NCI-Frederick, Frederick, Maryland 21702, nussinor@mail.nih.gov.
Koç University · TRNational Institutes of Health · USFrederick National Laboratory for Cancer Research · USLeidos (United States) · US

Funding

Protein Structure, Stability, and Amyloid FormationZIABC010440 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI NUSSINOV, RUTH · 2009 to 2025
$11.8M
Method Development: Efficient Computer Vision Based AlgorithmsZIABC010442 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI NUSSINOV, RUTH · 2009 to 2025
$2.4M
IQGAP1 in tumorigenesisZIACL080017 · CLC · CLINICAL CENTER · PI SACKS, DAVID · 2012 to 2025
$0k
CCR NIH HHS HHSN261200800001CNCI NIH HHS HHSN261200800001E
6 · The paper itself

Abstract

IQ motif-containing GTPase-activating proteins (IQGAPs) are scaffolding proteins playing central roles in cell-cell adhesion, polarity, and motility. The Rho GTPases Cdc42 and Rac1, in their GTP-bound active forms, interact with all three human IQGAPs. The IQGAP-Cdc42 interaction promotes metastasis by enhancing actin polymerization. However, despite their high sequence identity, Cdc42 and Rac1 differ in their interactions with IQGAP. Two Cdc42 molecules can bind to the Ex-domain and the RasGAP site of the GTPase-activating protein (GAP)-related domain (GRD) of IQGAP and promote IQGAP dimerization. Only one Rac1 molecule might bind to the RasGAP site of GRD and may not facilitate the dimerization, and the exact mechanism of Cdc42 and Rac1 binding to IQGAP is unclear. Using all-atom molecular dynamics simulations, site-directed mutagenesis, and Western blotting, we unraveled the detailed mechanisms of Cdc42 and Rac1 interactions with IQGAP2. We observed that Cdc42 binding to the Ex-domain of GRD of IQGAP2 (GRD2) releases the Ex-domain at the C-terminal region of GRD2, facilitating IQGAP2 dimerization. Cdc42 binding to the Ex-domain promoted allosteric changes in the RasGAP site, providing a binding site for the second Cdc42 in the RasGAP site. Of note, the Cdc42 "insert loop" was important for the interaction of the first Cdc42 with the Ex-domain. By contrast, differences in Rac1 insert-loop sequence and structure precluded its interaction with the Ex-domain. Rac1 could bind only to the RasGAP site of apo-GRD2 and could not facilitate IQGAP2 dimerization. Our detailed mechanistic insights help decipher how Cdc42 can stimulate actin polymerization in metastasis.

Indexed as

Models, MolecularAllosteric RegulationApoproteinsBinding Sitescdc42 GTP-Binding ProteinCrystallography, X-RayDimerizationHumansMolecular Dynamics SimulationMutagenesis, Site-DirectedMutationPeptide FragmentsProtein Interaction Domains and MotifsProtein Interaction MappingProtein MultimerizationProtein StabilityApoproteinscdc42 GTP-Binding ProteinCDC42 protein, humanIQGAP2 protein, humanPeptide Fragmentsrac1 GTP-Binding ProteinRAC1 protein, humanras GTPase-Activating ProteinsRecombinant Fusion Proteinsactinactin polymerizationallosteric regulationCDC42dimerizationIQGAP2molecular dynamicsRac1Rac (Rac GTPase)Ras

Identifiers

PMID29358323
PMCPMC5846150
OpenAlexW2784735632

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.