Evidence map›Paper›PMID 29358085›Full record

ArticleStem cell reports2018

Compartmentalization of HP1 Proteins in Pluripotency Acquisition and Maintenance.

Nur Zafirah Zaidan, Kolin J Walker, Jaime E Brown, Leah V Schaffer, Mark Scalf, Michael R Shortreed, Gopal Iyer, Lloyd M Smith, Rupa Sridharan

Open access · goldAbstract read
In one paragraph

Article in Stem cell reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 38 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
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  6. Article
  7. The regulation of transcription elongation in embryonic stem cells.Frontiers in cell and developmental biology · 2023
    Review
  8. Cancer-Associated Dysregulation of Sumo Regulators: Proteases and Ligases.International journal of molecular sciences · 2022
    Review
  9. Article
  10. Histone Chaperones as Cardinal Players in Development.Frontiers in cell and developmental biology · 2022
    Review
  11. Review
  12. Heterochromatin protein 1 beta regulates neural and neural crest development by repressing pluripotency-associated gene pou5f3.2/oct25 in Xenopus.Developmental dynamics : an official publication of the American Association of Anatomists · 2021
    Article
  13. Article
  14. Article
  15. Review
  16. Article
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  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Nur Zafirah ZaidanEpigenetics Theme, Wisconsin Institute for Discovery, University of Wisconsin-Madison, Madison, WI 53715, USA; Genetics Training Program, University of Wisconsin-Madison, Madison, WI 53715, USA.
Kolin J WalkerEpigenetics Theme, Wisconsin Institute for Discovery, University of Wisconsin-Madison, Madison, WI 53715, USA.
Jaime E BrownEpigenetics Theme, Wisconsin Institute for Discovery, University of Wisconsin-Madison, Madison, WI 53715, USA.
Leah V SchafferDepartment of Chemistry, University of Wisconsin-Madison, Madison, WI 53715, USA.
Mark ScalfDepartment of Chemistry, University of Wisconsin-Madison, Madison, WI 53715, USA.
Michael R ShortreedDepartment of Chemistry, University of Wisconsin-Madison, Madison, WI 53715, USA.
Gopal IyerDepartment of Human Oncology, University of Wisconsin-Madison, Madison, WI 53715, USA.
Lloyd M SmithDepartment of Chemistry, University of Wisconsin-Madison, Madison, WI 53715, USA.
Rupa SridharanEpigenetics Theme, Wisconsin Institute for Discovery, University of Wisconsin-Madison, Madison, WI 53715, USA; Department of Cell and Regenerative Biology, University of Wisconsin-Madison, Madison, WI 53715, USA. Electronic address: rsridharan2@wisc.edu.
University of Wisconsin–Madison · USWisconsin Institutes for Discovery · US

Funding

BIOTECHNOLOGY TRAINING PROGRAMT32GM008349 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI FOX, BRIAN G · 1989 to 2019
$22.5M
R01 Renewal: Collaboration of chromatin remodeling and signaling pathways in pluripotencyR01GM113033 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI SRIDHARAN, RUPA · 2015 to 2023
$2.9M
Intact Proteoform Identification and QuantificationR01GM114292 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI GOULD, MICHAEL N, SMITH, LLOYD M · 2015 to 2018
$1.6M
NIGMS NIH HHS R01 GM113033NIGMS NIH HHS R01 GM114292NIGMS NIH HHS T32 GM008349
6 · The paper itself

Abstract

The heterochromatin protein 1 (HP1) family is involved in various functions with maintenance of chromatin structure. During murine somatic cell reprogramming, we find that early depletion of HP1γ reduces the generation of induced pluripotent stem cells, while late depletion enhances the process, with a concomitant change from a centromeric to nucleoplasmic localization and elongation-associated histone H3.3 enrichment. Depletion of heterochromatin anchoring protein SENP7 increased reprogramming efficiency to a similar extent as HP1γ, indicating the importance of HP1γ release from chromatin for pluripotency acquisition. HP1γ interacted with OCT4 and DPPA4 in HP1α and HP1β knockouts and in H3K9 methylation depleted H3K9M embryonic stem cell (ESC) lines. HP1α and HP1γ complexes in ESCs differed in association with histones, the histone chaperone CAF1 complex, and specific components of chromatin-modifying complexes such as DPY30, implying distinct functional contributions. Taken together, our results reveal the complex contribution of the HP1 proteins to pluripotency.

Indexed as

AnimalsCellular ReprogrammingChromatinChromobox Protein Homolog 5Chromosomal Proteins, Non-HistoneEndopeptidasesExoribonucleasesHistone-Lysine N-MethyltransferaseHistonesHumansInduced Pluripotent Stem CellsMiceMice, KnockoutMultiprotein ComplexesNuclear ProteinsOctamer Transcription Factor-3CBX1 protein, humanCBX5 protein, humanChromatinChromobox Protein Homolog 5Chromosomal Proteins, Non-HistoneCnot7 protein, mouseDppa4 protein, mouseDpy30 protein, mouseEndopeptidasesExoribonucleasesHistone-Lysine N-MethyltransferaseHistonesMultiprotein ComplexesNuclear ProteinsOctamer Transcription Factor-3Pou5f1 protein, mouseProteinsRepressor ProteinsRibonucleasesSENP7 protein, mouseTranscription FactorsDppa4H3.3H3K9MHP1α knockoutHP1β knockoutHP1γ knockoutiPSCpluripotencyreprogrammingSenp7

Identifiers

PMID29358085
PMCPMC5830946
OpenAlexW2783671461

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.