Evidence map›Paper›PMID 29357812›Full record

ArticleBMC genomics2018

The invasive MED/Q Bemisia tabaci genome: a tale of gene loss and gene gain.

Wen Xie, Xin Yang, Chunhai Chen, Zezhong Yang, Litao Guo, Dan Wang, Jinqun Huang, Hailin Zhang, Yanan Wen, Jinyang Zhao and 5 more

Abstract read
In one paragraph

Article in BMC genomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

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  9. Tracking Adaptive Pathways of Invasive Insects: Novel Insight from Genomics.International journal of molecular sciences · 2023
    Review
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  12. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Wen XieDepartment of Entomology, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Science, No. 12 Zhongguancun Nandajie, Haidian District, Beijing, 100081, China.
Xin YangDepartment of Entomology, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Science, No. 12 Zhongguancun Nandajie, Haidian District, Beijing, 100081, China.
Chunhai ChenBGI-Shenzhen, Shenzhen, 518083, China.
Zezhong YangDepartment of Entomology, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Science, No. 12 Zhongguancun Nandajie, Haidian District, Beijing, 100081, China.
Litao GuoDepartment of Entomology, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Science, No. 12 Zhongguancun Nandajie, Haidian District, Beijing, 100081, China.
Dan WangBGI-Shenzhen, Shenzhen, 518083, China.
Jinqun HuangBGI-Shenzhen, Shenzhen, 518083, China.
Hailin ZhangBGI-Shenzhen, Shenzhen, 518083, China.
Yanan WenDepartment of Entomology, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Science, No. 12 Zhongguancun Nandajie, Haidian District, Beijing, 100081, China.
Jinyang ZhaoBGI-Shenzhen, Shenzhen, 518083, China.
Qingjun WuDepartment of Entomology, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Science, No. 12 Zhongguancun Nandajie, Haidian District, Beijing, 100081, China.
Shaoli WangDepartment of Entomology, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Science, No. 12 Zhongguancun Nandajie, Haidian District, Beijing, 100081, China.
Brad S CoatesUnited States Department of Agriculture, Agricultural Research Service, Corn Insects & Crop Genetics Research Unit, Ames, IA, 50011, USA.
Xuguo ZhouDepartment of Entomology, University of Kentucky, S-225 Agricultural Science Center North, Lexington, KY, 40546-0091, USA. xuguozhou@uky.edu.
Youjun ZhangDepartment of Entomology, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Science, No. 12 Zhongguancun Nandajie, Haidian District, Beijing, 100081, China. zhangyoujun@caas.cn.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundSweetpotato whitefly, Bemisia tabaci MED/Q and MEAM1/B, are two economically important invasive species that cause considerable damages to agriculture crops through direct feeding and indirect vectoring of plant pathogens. Recently, a draft genome of B. tabaci MED/Q has been assembled. In this study, we focus on the genomic comparison between MED/Q and MEAM1/B, with a special interest in MED/Q's genomic signatures that may contribute to the highly invasive nature of this emerging insect pest.

resultsThe genomes of both species share similarity in syntenic blocks, but have significant divergence in the gene coding sequence. Expansion of cytochrome P450 monooxygenases and UDP glycosyltransferases in MED/Q and MEAM1/B genome is functionally validated for mediating insecticide resistance in MED/Q using in vivo RNAi. The amino acid biosynthesis pathways in MED/Q genome are partitioned among the host and endosymbiont genomes in a manner distinct from other hemipterans. Evidence of horizontal gene transfer to the host genome may explain their obligate relationship. Putative loss-of-function in the immune deficiency-signaling pathway due to the gene loss is a shared ancestral trait among hemipteran insects.

conclusionsThe expansion of detoxification genes families, such as P450s, may contribute to the development of insecticide resistance traits and a broad host range in MED/Q and MEAM1/B, and facilitate species' invasions into intensively managed cropping systems. Numerical and compositional changes in multiple gene families (gene loss and gene gain) in the MED/Q genome sets a foundation for future hypothesis testing that will advance our understanding of adaptation, viral transmission, symbiosis, and plant-insect-pathogen tritrophic interactions.

Indexed as

Genome, InsectInsecticide ResistanceAnimalsCrops, AgriculturalCytochrome P-450 Enzyme SystemGlucuronosyltransferaseHemipteraHost SpecificityInsect ProteinsMultigene FamilyPhylogenySymbiosisTranscriptomeCytochrome P-450 Enzyme SystemGlucuronosyltransferaseInsect ProteinsBemisia tabaciDetoxification enzymesGene gain and lossGenomeInvasive speciesMED/QSymbiosis

Identifiers

PMID29357812
PMCPMC5778671

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.