Evidence map›Paper›PMID 29357100›Full record

ArticleBiotechnology letters2018

Autodisplay of an avidin with biotin-binding activity on the surface of Escherichia coli.

H D Pardavé-Alejandre, J E Alvarado-Yaah, E N Pompa-Mera, J E Muñoz-Medina, B Sárquiz-Martínez, C E Santacruz-Tinoco, R G Manning-Cela, V Ortíz-Navarrete, C López-Macías, C R González-Bonilla

Abstract read
PubMed Publisher
In one paragraph

Article in Biotechnology letters, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.1field-weighted citation impact, top 56% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 3 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

H D Pardavé-AlejandreLaboratorio Central de Epidemiología, Coordinación de Vigilancia Epidemiológica, Instituto Mexicano del Seguro Social, Mexico City, México.
J E Alvarado-YaahLaboratorio Central de Epidemiología, Coordinación de Vigilancia Epidemiológica, Instituto Mexicano del Seguro Social, Mexico City, México.
E N Pompa-MeraUnidad de Investigación en Enfermedades Infecciosas y Parasitarias, Hospital de Pediatría, Centro Médico Nacional Siglo XXI, Instituto Mexicano del Seguro Social, Mexico City, México.
J E Muñoz-MedinaLaboratorio Central de Epidemiología, Coordinación de Vigilancia Epidemiológica, Instituto Mexicano del Seguro Social, Mexico City, México.ORCID http://orcid.org/0000-0002-1289-4457
B Sárquiz-MartínezLaboratorio Central de Epidemiología, Coordinación de Vigilancia Epidemiológica, Instituto Mexicano del Seguro Social, Mexico City, México.
C E Santacruz-TinocoLaboratorio Central de Epidemiología, Coordinación de Vigilancia Epidemiológica, Instituto Mexicano del Seguro Social, Mexico City, México.
R G Manning-CelaDepto. de Biomedicina Molecular, Centro de Investigación y de Estudios Avanzados del IPN, Mexico City, Mexico.
V Ortíz-NavarreteDepto. de Biomedicina Molecular, Centro de Investigación y de Estudios Avanzados del IPN, Mexico City, Mexico.
C López-MacíasUnidad de Investigación Médica en Inmunoquímica, Hospital de Especialidades, Centro Médico Nacional Siglo XXI, Instituto Mexicano del Seguro Social, Mexico City, México.
C R González-BonillaLaboratorio Central de Epidemiología, Coordinación de Vigilancia Epidemiológica, Instituto Mexicano del Seguro Social, Mexico City, México. cesar.gonzalezb@imss.gob.mx.
Mexican Social Security Institute · MXInstituto Politécnico Nacional · MX

Funding

Consejo Mexiquense de Ciencia y Tecnología 12BCD0045-IConsejo Nacional de Ciencia y Tecnología 228005Consejo Nacional de Ciencia y Tecnología CN-07-122Fondo de Investigación en Salud FIS/IMSS/PROT/566
6 · The paper itself

Abstract

objectivesTo display a recombinant avidin fused to the autotransporter ShdA to bind biotinylated molecules on the surface of Escherichia coli.

resultsTwo chimeric protein constructs containing avidin fused to the autotransporter ShdA were expressed on the surface of Escherichia coli DH5α. One fusion protein contained 476 amino acids of the ShdA α and β domains, whereas the second consisted of a 314 amino acid from α and truncated β domains. Protein production was verified by SDS-PAGE using an antibody to the molecular FLAG-tag. The surface display of the avidin-shdA fusion protein was confirmed by confocal microscopy and flow cytometry analysis, and the biotin-binding activity was evaluated by fluorescence microscopy and flow cytometry using biotin-4-fluorescein and biotinylated-ovalbumin (OVA).

conclusionsExpression of a recombinant avidin with biotin-binding activity on the surface of E. coli was achieved using the autotransporter ShdA. This system is an alternative to bind biotinylated molecules to E. coli.

Indexed as

AvidinBacterial Outer Membrane ProteinsBacterial ProteinsBiotinElectrophoresis, Polyacrylamide GelEscherichia coliFluoresceinsMembrane ProteinsMicroscopy, ConfocalPromoter Regions, GeneticRecombinant Fusion ProteinsAvidinBacterial Outer Membrane ProteinsBacterial ProteinsBiotinbiotin-4-fluoresceinFluoresceinsMembrane ProteinsRecombinant Fusion ProteinsShdA protein, Salmonella entericaAutodisplayAvidinBiotin-binding activityIn trans surface displayShdA

Identifiers

PMID29357100
OpenAlexW2785037501

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.