Evidence map›Paper›PMID 29356878›Full record

ArticleCurrent microbiology2019

Complete Genome Sequence of Pseudomonas Parafulva PRS09-11288, a Biocontrol Strain Produces the Antibiotic Phenazine-1-carboxylic Acid.

Yu Zhang, Ping Chen, Guoyou Ye, Haiyan Lin, Deyong Ren, Longbiao Guo, Bo Zhu, Zhongwei Wang

Abstract readLetter
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In one paragraph

Article in Current microbiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Frontiers in plant science · 2026
    Article
  2. Review
  3. Article
  4. In Vitro Study of Biocontrol Potential of RhizosphericPathogens (Basel, Switzerland) · 2021
    Article
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Yu ZhangState Key Lab for Rice Biology, China National Rice Research Institute, Hangzhou, 310006, People's Republic of China.
Ping ChenState Key Lab for Rice Biology, China National Rice Research Institute, Hangzhou, 310006, People's Republic of China.
Guoyou YeAgricultural Genomes Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, 518120, People's Republic of China.
Haiyan LinState Key Lab for Rice Biology, China National Rice Research Institute, Hangzhou, 310006, People's Republic of China.
Deyong RenState Key Lab for Rice Biology, China National Rice Research Institute, Hangzhou, 310006, People's Republic of China.
Longbiao GuoState Key Lab for Rice Biology, China National Rice Research Institute, Hangzhou, 310006, People's Republic of China.
Bo ZhuSchool of Agriculture and Biology, Shanghai Jiao Tong University/Key Laboratory of Urban Agriculture by Ministry of Agriculture of China, Shanghai, 200240, People's Republic of China. bzhu1981@sjtu.edu.cn.
Zhongwei WangState Key Lab for Rice Biology, China National Rice Research Institute, Hangzhou, 310006, People's Republic of China. 390346815@qq.com.

Funding

National Natural Science Fund of China 31521064
6 · The paper itself

Abstract

Rhizoctonia solani is a plant pathogenic fungus, which can infect a wide range of economic crops including rice. In this case, biological control of this pathogen is one of the fundmental way to effectively control this pathogen. The Pseudomonas parafulva strain PRS09-11288 was isolated from rice rhizosphere and shows biocontrol ability against R. solani. Here, we analyzed the P. parafulva genome, which is ~ 4.7 Mb, with 4310 coding sequences, 76 tRNAs, and 7 rRNAs. Genome analysis identified a phenazine biosynthetic pathway, which can produce antibiotic phenazine-1-carboxylic acid (PCA). This compound is responsible for biocontrol ability against R. solani Kühn, which is one of the most serious fungus disease on rice. Analysis of the phenazine biosynthesis gene mutant, ΔphzF, which is very important in this pathway, confirmed the relationship between the pathway and PCA production using LC-MS profiles. The annotated full genome sequence of this strain sheds light on the role of P. parafulva PRS09-11288 as a biocontrol bacterium.

Indexed as

Genome, BacterialAnti-Bacterial AgentsBacterial ProteinsBiosynthetic PathwaysOryzaPest Control, BiologicalPhenazinesPlant DiseasesPseudomonasRhizoctoniaWhole Genome Sequencing1-phenazinecarboxylic acidAnti-Bacterial AgentsBacterial ProteinsPhenazines

Identifiers

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.