Evidence map›Paper›PMID 29355850›Full record

ArticleNature chemical biology2018

Chemical hijacking of auxin signaling with an engineered auxin-TIR1 pair.

Naoyuki Uchida, Koji Takahashi, Rie Iwasaki, Ryotaro Yamada, Masahiko Yoshimura, Takaho A Endo, Seisuke Kimura, Hua Zhang, Mika Nomoto, Yasuomi Tada and 4 more

Abstract read
In one paragraph

Article in Nature chemical biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 78 papers.

0numbers the graph read from it
0cells of the map it votes in
78citing papers in PubMed
26.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

78 citing papers in PubMed, 152 citations in OpenAlex.

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18 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 2 countries.

Naoyuki UchidaInstitute of Transformative Bio-Molecules (WPI-ITbM), Nagoya University, Chikusa, Nagoya, Japan.
Koji TakahashiInstitute of Transformative Bio-Molecules (WPI-ITbM), Nagoya University, Chikusa, Nagoya, Japan.ORCID 0000-0001-5438-7624
Rie IwasakiInstitute of Transformative Bio-Molecules (WPI-ITbM), Nagoya University, Chikusa, Nagoya, Japan.
Ryotaro YamadaGraduate School of Science, Nagoya University, Chikusa, Nagoya, Japan.
Masahiko YoshimuraGraduate School of Science, Nagoya University, Chikusa, Nagoya, Japan.
Takaho A EndoLaboratory for Integrative Genomics, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.
Seisuke KimuraDepartment of Bioresource and Environmental Sciences, Kyoto Sangyo University, Kyoto, Japan.ORCID 0000-0002-6796-3675
Hua ZhangInstitute of Transformative Bio-Molecules (WPI-ITbM), Nagoya University, Chikusa, Nagoya, Japan.
Mika NomotoGraduate School of Science, Nagoya University, Chikusa, Nagoya, Japan.
Yasuomi TadaCenter for Gene Research, Nagoya University, Chikusa, Nagoya, Japan.ORCID 0000-0001-9900-069X
Toshinori KinoshitaInstitute of Transformative Bio-Molecules (WPI-ITbM), Nagoya University, Chikusa, Nagoya, Japan.
Kenichiro ItamiInstitute of Transformative Bio-Molecules (WPI-ITbM), Nagoya University, Chikusa, Nagoya, Japan.ORCID 0000-0001-5227-7894
Shinya HagiharaInstitute of Transformative Bio-Molecules (WPI-ITbM), Nagoya University, Chikusa, Nagoya, Japan.ORCID 0000-0003-0348-7873
Keiko U ToriiInstitute of Transformative Bio-Molecules (WPI-ITbM), Nagoya University, Chikusa, Nagoya, Japan.ORCID 0000-0002-6168-427X
Nagoya University · JPHoward Hughes Medical Institute · USJapan Science and Technology Agency · JPKyoto Sangyo University · JPRIKEN Center for Integrative Medical Sciences · JP

Funding

Howard Hughes Medical Institute
6 · The paper itself

Abstract

The phytohormone auxin indole-3-acetic acid (IAA) regulates nearly all aspects of plant growth and development. Despite substantial progress in our understanding of auxin biology, delineating specific auxin response remains a major challenge. Auxin regulates transcriptional response via its receptors, TIR1 and AFB F-box proteins. Here we report an engineered, orthogonal auxin-TIR1 receptor pair, developed through a bump-and-hole strategy, that triggers auxin signaling without interfering with endogenous auxin or TIR1/AFBs. A synthetic, convex IAA (cvxIAA) hijacked the downstream auxin signaling in vivo both at the transcriptomic level and in specific developmental contexts, only in the presence of a complementary, concave TIR1 (ccvTIR1) receptor. Harnessing the cvxIAA-ccvTIR1 system, we provide conclusive evidence for the role of the TIR1-mediated pathway in auxin-induced seedling acid growth. The cvxIAA-ccvTIR1 system serves as a powerful tool for solving outstanding questions in auxin biology and for precise manipulation of auxin-mediated processes as a controllable switch.

Indexed as

Gene Expression Regulation, PlantArabidopsisArabidopsis ProteinsCrosses, GeneticF-Box ProteinsIndoleacetic AcidsKineticsMutationPlant Growth RegulatorsPlant RootsProtein BindingProtein EngineeringReceptors, Cell SurfaceSeedlingsSignal TransductionTransgenesArabidopsis ProteinsF-Box Proteinsindoleacetic acidIndoleacetic AcidsPlant Growth RegulatorsReceptors, Cell SurfaceTIR1 protein, Arabidopsis

Identifiers

PMID29355850
PMCPMC5812785
OpenAlexW2785218065

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.